Gene detail

Detailed information of amic_s0137.g5.t3 in Acropora microphthalma

Genomic Location: sc0000137_pilon:105475...130155
NR annotation: XP_029198140.2, beta-galactosidase-1-like protein 2 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0137.g5.t3

CTGTTCTTTGAGGTGAATCTTCAACTTGCGTTCTACGATGATGAGAACACTGCATTTTCGTAAAAAGCCCGTTCTTATCATCCTTGGGATATCGATTTGTCTGATATTTTGGATGACTTTTAAGACCTTAAGAGGTTTACCAATGGAAATGCGTGTTTTGAGAACTGAGCGAGAGGAATTCTATCTTGAAGGAAAACCATTTCGCATTCTCAGTGGATCTATTCATTACTTTAGAGTTGTTCCAGAATATTGGAGAGACCGTCTACTTAAACTCAAAGCTATGGGGTTAAACACTGTAGAAACATATGTTCCTTGGAATTTACATGAAGAAATTAGAGGTCAATTCAACTTTCAAGGCATTTTAGACGTGGTACATTTTATTAAATTAGCCCAAGATCTTGGTTTGTATGTGATCATTCGTCCTGGGCCATACATTTGTGCTGAGTGGGAGCTAGGAGGCCTACCAAGACATTTTATTAAATTAGCCCAAGATCTTGGTTTGTATGTGATCATTCGTCCTGGGCCATACATTTGTGCTGAATGGGAGCTAGGAGGCCTACCAAGCTGGCTGCTAAGGGATCCAAAAATGAAGCTTCGTTCCATGCACCCAGCTTATATCCATGCAGTGGATAATTATTTTAACAAGCTTCTCCCAATGTTTGTTCCACTTCAGTTTTCTTATGGTGGTCCAATCATAGCTTTTCAAGTGGAAAATGAATATGGAAGCTTTGGTGAAAACTTAAGTGTTGAATATATGACGCATCTAAAAAAGCTCATGATAAAGAATGGACTTAAAGAACTTCTGTTTACCTCCGATGGGATCAAACAGCTGAAAGCCCATCATTATCCTCATGTACGAGGAGTGTTGAAGACTGCGAACTTTCAGAACAACGTCACAAATAAACTTATCGACTTGAGGCAACTTCAGCCTGACAAACCGTTGATGGTCACCGAATTTTGGCCTGGTTGGTTTGATCATTGGGGCGAGCCACATCATCAAATGGAAGCCGAGAAAGTAGCGCAAAGAGTGTCAAATGTGCTAGAGGCCGGTGCATCTATCAACTTGTATATGTTCCATGGAGGAACAACATTTGGTTTCTTGAATGGTGCAAACGCTGTAAAGGAAAACTTTCAATACCAGCCAACTGTCTCATCATATGATTATGATGCACCGTTATCAGAAGCTGGTGACGTCACTAAGAAGTACAAGTTATTGAGAGACGTCTTTGCCAAGTACAACGCCGATGTTAAAGGAAAAACTCCTGATATTTGAACTTGATAGATGTGAAACTCCAATGGTATCGTTTGTCGAAGAACCGAAGATCACCGGGGAAATTGTTAACAGATTTTAACATGAATGAACTCTGGGAAGTTTtagagtgttttcactcgtgtgatcgatgagcttgttgttaaagcaaaacaaaagaaagcgtttgtattagaatagagttcaattgccagaggattagttggggacaccaacatggctgccgtgacgtcacctgaaaacactctatCGATAACATTCTTAACTTCTTAACCGTCTTCTAAACTTTTATTCTCTTCATTCGTTGCCAACTAAGGGAATAGCGTTAACTAGTTATTTGCGTGGAAAGTGTTTGGGCCATCATTTGGGTTTATTTTGGATCGGGATTTCCCCCTACTGTTAAAGTATTCGCAATCTCAAAACACTTTTCGGTTAAATGCATCCAAAAAGAAAACTAGACAAACCCAGGacctctccagacacggttttttgacagatgaacgaaacagtagatgatacaacgcatacaatacaccagatactgacaacaatagaagctacaggtcataggagtaaaaaatgaattaaagacaggccaggaagagatatagaatttctGAAAAACGAAGCATTGATTGTTTAAAGAGCAAATAACTAGGGGCGTTGAAACAAGTTAACATGAAGAGTGGGGAGAGATGTAGTTTCAATTGCGCTGTGGAGTAGTTTGATGCTGTAAATACAGTCCTAAACAACTATAGTTGAGTATTATGGTTTGTTCATCGCAGCTATTATTTACGCCACTTAAGCAGTACCGAAAGAAAGTCTGAAAAAATCCAGGCTTGAACGGGATTCGAACCTATGACCAGTGCGATACCGGTGCAGTGCTCGACTAGTTGAGCTGTCaagcccacaaaaatgaccagctcccagtgggcttgaaagctcaactggtcgagcactgcaccggtatcgcagtggtcaggggttcgaatcccgttcaagcctggattttttcggactttctttcgttactgcgtaagtagcgttaataatagctacgatgatcaaaccataatatgcttctgtccgcagttcaaatgtgtgtatttcacatattatctatcaaTTATGGTTGAAGTCGGGAATAATTTATAGTTTTTAACCGACCGAGTAAATACTATTTACGTCTGTTTTGTTCTTTTGGTGTAAGATCAGTTAATGTTCCTTCACAAGTATATTGACTTTAATAAAAAAAATCGCCGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RSQ1	Beta-galactosidase-1-like protein 3 OS=Mus musculus OX=10090 GN=Glb1l3 PE=1 SV=1
Q8NCI6	Beta-galactosidase-1-like protein 3 OS=Homo sapiens OX=9606 GN=GLB1L3 PE=1 SV=3
Q8IW92	Beta-galactosidase-1-like protein 2 OS=Homo sapiens OX=9606 GN=GLB1L2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000517 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01301 all species →	Glyco_hydro_35	Glycosyl hydrolases family 35	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031330 all species →	Domain	Glycoside hydrolase 35, catalytic domain	Interproscan
IPR019801 all species →	Conserved_site	Glycoside hydrolase, family 35, conserved site	Interproscan
IPR001944 all species →	Family	Glycoside hydrolase, family 35	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23421 all species →	BETA-GALACTOSIDASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0004565 all species →	Molecular Function	beta-galactosidase activity	Interproscan
GO:0005773 all species →	Cellular Component	vacuole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0137.g5.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.