Detailed information of amic_s0138.g19.t2 in Acropora microphthalma

Genomic Location: sc0000138_pilon:340604...369505
NR annotation: XP_015774967.1, PREDICTED: protein PAT1 homolog 1-like isoform X2 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86TB9Protein PAT1 homolog 1 OS=Homo sapiens OX=9606 GN=PATL1 PE=1 SV=2
Q5R8Q4Protein PAT1 homolog 1 OS=Pongo abelii OX=9601 GN=PATL1 PE=2 SV=1
B5DF93Protein PAT1 homolog 1 OS=Rattus norvegicus OX=10116 GN=Patl1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004039 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09770
all species →		PAT1Topoisomerase II-associated protein PAT1RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019167
all species →		DomainmRNA decay factor PAT1 domainInterproscan
IPR039900
all species →		FamilyPat1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21551
all species →		TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000290
all species →		Biological Processdeadenylation-dependent decapping of nuclear-transcribed mRNAInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0033962
all species →		Biological ProcessP-body assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K12617PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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