Gene detail

Detailed information of amic_s0139.g51.t2 in Acropora microphthalma

Genomic Location: sc0000139_pilon:797537...807851
NR annotation: XP_029186377.1, LOW QUALITY PROTEIN: lamin-B1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0139.g51.t2

TAACAAGAAATCTCTTGTAACAAAGCATGAAGCGAAGCAACAGCGACGTATATATCAGTGTTCTCTCTGAAATGACCTCTGCCTCAAGGTGCGCGGCAAACAGTTACAAGAGAAATTCCCGCTCAGCAGAAAAGCCTTTGCACTCTTCAAGTAAGATGAATTTAGCTAAAGAAAAAGAGGAGCTTCAACATCTGAATGATCGCTTTGCGACCTACATCAACAAAGTCAAAACTTTGGAGGAGGAAAACAAACGACTTAAAAAGAACGCACGCTTTCTATCAAAAATGGCGACGACAACAGCTTCACCACGGACTCCAGCGTCTTCAGAACGTATCGGAGCAGCTTCGCCCACCAAGATGTCCCGCGAGCAAGAGAAGGACGAACTTCAGCATCTGAATAGTCGTCTTGCCGTGTACATCGACCGTGTGAATGCATTGGAGGAATCCAACAACAAATTAACGGCTGAGATAACTTTGACGAAGTCGAGAACACGCACAGAGGTGGAAAGCGTGAAGAATTCCTTTGAATCGGAGCTAGCTGATGCACGAAGACTTTTAGACGAGACTGCTAAGGAGAAAGCACGAGAACAGATGGAAAATAGAAAGAATGCATCAGTTGCAGACGAGTTCAAGAAGAAGTTTGAAAAGGAGGTTGCAGCACATAAGAAGACTGAAGATGAGTTAAAAGCATCACACAGAAAGCTCTCTGAAAAAGAAGCACAGCTATCAGTGGTAAACCAGGAAGCAAGGAGCCTTCAGTCAGTTCTTGAAGAACTAAGAAAGGAGTGCCAGGAACTCAAGGATTCCCTGGAGTCTGCTAAATATGCCCTTGAGCAAGAAACACTCTCAAGGGTGGATCTTGAAAACAAATTACAGTCAAAGGATGAAGAACTTAATTTCAAGAAGGAAATGTACAACAAAGAAATTCTTGATATCCGTTCCCAGTTGAAAACTGTTGAAACACAGCACATTAAAATAGCATCTGATACAAAGTCACGATATGAAGGAATGTTGGCTGAAAAGCTCCAGGAACTGAGAGATCTGTATGACACTGAAGCCAGGCAATACAGAGATGAAACAGACAGTCTTTACAGTTCCAAGTATGATGAATTACATAAGATGTCTTCCAAGGACTTAGAAGAATTGACATTGGTCAGAGAGGAGAGAAGAGCGCTATCCATTACAGTGGAAAATCTCAGATCAGAGCTTAACCAATTAAAGTCCAAGAATGATACCCTAATGTTGAGAATTGAAGATTTGGAAAAGCTGCGAGCTAGTGATCAAGAAAGTGCTGATCAAGCCATTTCCAGTCGAGATAAACAGATAAGAGAGTTGCGGAAAAGAATGGATTCTGCCCTAAGAGACTATGAGGATCTCATGGGGGTGAAGACTGCACTTGACATTGAGATCTCAACTTACAGGAAAATGCTTGAAGGAGAAGAATCAAGGTTGAACATCACTCCGCCAGCCTCACCTGTGTTTGGATCTTCCATGAAGCCTTCAAGACGATCTGTCAAGCGTGTGCGCACAGAAGAAGAATCCACTGGAACAAAGTACTCTCATCAAGGATACATTCAAATTAAGGAAGCAAATGCAGATGGAAAATACATAAAGTTATTTAACAGTGGGTCTCAAGATTTTTCATTGGGTGGTTGGTTATTGGAGAGATCAGTGGATGGGGACCCAGCCATTGTCTACAAGTTCACTCCTAAATATGTCTTGAAAAGTGGTAGTTATGTGACAGTTTGGGCTTCTCAAGGTGGTGGCCAACACAAGCCACCAACAGACCTGGTATTTCGACAAAAGGCAAGCTGGGGCGTTGGCAGAGAAACACGTACTTTGTTAAAGGATGCTGATGGCCAGGAGGCAGCTTCTGCAGTAAGCGAGGAAGTGAGCATCGTTAGGACTGATGAAATAGACACCCGCCCAGTTATGTATGCTAAAAGTGATGGAGAAACGGGCAAAGGCTGTTTAATTCAGTAGGGATTTTTTGTATGCGAAGTCATAATCTATCTCTTTACTTTTAATTAGTCTTAGACTGAAGGTTGAATTATTTTGGTTTATATCTGTAAAGTGTAAAAATAAGTGTGGGAAATTTTTATAATTTTTTGTAACTCTCAGTACATAAAATGCCTGTGAAATAGCTAATCATTTTTTTAAAGGAACATGTTCTTGTTCAATAGGTTATTCCCAACGTGCGATATAATTTACTAAATTGTTCAAGAATATTTATATCCGTATCTCCGAGACTGTATTATCATTTTACCAACGAAAGTAATTTGGTAATTTATGCTAGTTTATCTTATCAGCCCGCCTCTTCAGTAATGACTGTGTTGAAGTTAAAGTAAGTAACAGCATTGCCATTCACAGGCGTGTTTGTTCGACTTAACCATTAACTTACCATTAACTTACCATTTTGGAAAACCGGGTATACCACGAAAGACAGATGGCGGTTCCTGCACTTTTTTTCTGGCGACATTGGCATCATTTTATAATTAGGCAAAAGAAATGTGTGAAACTGTCGATTCCGTGCCAGAAGTAAGCTGATGAGTCATTATTTGGGCGACAGTTCTTGTTTTACCTCGAGGAGATCATTTTTAAAAGGCAGATAATATTCATGTAGGCGTTTATGAAGTTTACACTCATGCGCTTAATAAACTTCAGAAATGATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20700	Lamin-B1 OS=Homo sapiens OX=9606 GN=LMNB1 PE=1 SV=2
P14731	Lamin-B1 OS=Gallus gallus OX=9031 GN=LMNB1 PE=1 SV=1
P70615	Lamin-B1 OS=Rattus norvegicus OX=10116 GN=Lmnb1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003515 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00932 all species →	LTD	Lamin Tail Domain	Domain	Interproscan
PF00038 all species →	Filament	Intermediate filament protein	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001322 all species →	Domain	Lamin tail domain	Interproscan
IPR039008 all species →	Domain	Intermediate filament, rod domain	Interproscan
IPR018039 all species →	Conserved_site	Intermediate filament protein, conserved site	Interproscan
IPR036415 all species →	Homologous_superfamily	Lamin tail domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45721 all species →	LAMIN DM0-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005200 all species →	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005652 all species →	Cellular Component	nuclear lamina	Interproscan
GO:0006998 all species →	Biological Process	nuclear envelope organization	Interproscan
GO:0007097 all species →	Biological Process	nuclear migration	Interproscan
GO:0031507 all species →	Biological Process	heterochromatin formation	Interproscan
GO:0051664 all species →	Biological Process	nuclear pore localization	Interproscan
GO:0090435 all species →	Biological Process	protein localization to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07611	LMNB; lamin B	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.