Gene detail

Detailed information of amic_s0140.g15.t2 in Acropora microphthalma

Genomic Location: sc0000140_pilon:206626...235595
NR annotation: XP_044163017.1, poly [ADP-ribose] polymerase 1-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0140.g15.t2

ATGGCCGAAGACCTTCCATTCAAAGCAGAGTACGCGAAATCAAATAGATCTTCTTGCAAGCTATGCAGGGAAAAAATAGCGAAGGACAGCCTTAGAGTTGCAAAGATGGTACAGTCACCCCACTTTGATGGCAAGGTGCCAAACTGGTTTCATTTCAGTTGCTTCTTTAGAAAACAAAAGGTGAAAAACTGGACCGACATTTGGGGATTTGATTCTCTACGGTGGGAGGACCAAGAAAAAGTGAAAGCAAAAATTGAAGGGGGAGGGGGTGGAGGGAATGAAGCACCTTCAGCTGATGCTCTGGAAAATGGTGTCGCAGATGATCTGTTAGTGGAGTATGCAAAATCTAACCGCAGTAAATGCAAAAACTGCAAAGAACAGATTGACAAAGGAGAAATTCGACTTGCAAAAGTTCAGGAACCTGATGCAGAATCTAATGCGCCTGCAGGAATGGCAATCCCCTGGTGGCATCACGTTGACTGCTTTGTTCAATGCAGGGAGTCTTTGTCGGTGGACTCCAGTGTAACAGGGGAATCTTTCACTGGCTTTACCAAGCTAAATAAAGAAGATAAAGCTTTGCTGAAGAGAAAGCTTGGAAAAGGAGCAAAGACAAAGGGGAAAGGTAGCAAACGAAAGGCAGTGGCAGTGGATGAAACAGATTCAAAAAGGAAGAAGATTGCTGAAGAAGATGAAATACAGAAACAGCTGAAGGAACAAAGTAAGCGTTTGTGGAAGGTTAGGGATGATTTACAGAAGAATTGTTCTTCGCAAGAGTTGAAAGAGATGTTGGAGGACAATGGAATGTCGACACATGGAGGGGAAAGCTTTTTGCTTGACAGATGCTCTGATGGGATGAGGTTTGGACGGCTGCTTCCTTGTGAAGAATGCAGTGGCGGTCAACTGGTGTACAGAACTGAAGGATATTGCTGCACTGGTAATTTAACAGCATGGACCAAGTGTATGTTTGTTACAAAGGACCCAAAACGAGCTTCATGGAAAATTTCCGATGATCTGAAAGAAGCTTCCGATTTTCTGAAAAACTTTAAATGCAAGAAAAGGCAGAGGATCTTCCCTACAATTTCTGCTTCCACCACAGCGTCACCCAAAAGAATCAAATCAGAGGCCATTGAAGCAAACAATGCTCAAGTTGTCTCTGCTTTATCCCCTGAAAAGCCTCTTTCTGGAATGACATTGGCTGTCATAGGAAGACTTAAACAGAACAAGGGAAAACTTTCCACAGCTATTGAAGATCTTGGTGGATCAGTAGTAGAAAAAGTCAATAATTCAGTGGACTGTTGCATCAGCTCTCAAGCTGAAGTTGACAAGAAGAGTAAGAAAATGCAAGATGCTGAACGGTTTGATGTTCCAGTTGTGAGTGAAGATTACCTCGAGGCAGTCAAAAAGGGCAGGGCCAGATCAATGATCACGCAGCATAGCATTGCATCCTGGGGAAACAATAAGGCTGCTAGTGCTGTGGATGGAGCCGTTGTGTCCAATGGCAGCGGTTCAAAGGTCATGAAAAGTGGTCTTGAAGGAGGATCCGCCATGAAAATGAAGATTGCTGTTAAAGGAGGGGCCGCTGTAGACCCGGATTCAGAGATGGAAGACAGGTGTCACGTGTTTCAAGAGAATGGCAATATTTACAGCGCAACTTTGGGTTTAGTGGACATTGTCCGAGGCGCAAATTCTTATTACAAACTTCAGTTGTTAAAAGACGATAAAAAGAATTCTTATCATCTTTTCCGTTCTTGGGGAAGAGTTGGAACACACATTGGAGGAACTAAATTGGAGCGGTGTGACTCAAAGGCAGACGCCATTCGGAGCTTTTTGAATTTGTATGGCGAGAAAACAGGAAACAGCTGGGAAGACAGGAAGAATTTCGTGAAGCGCCCAAACAAGTTCTATCCGCTAGAGATCGACTATGGCCAGGATAATGAGGAACTCAAGTCGTCCATTGCAGCCGGAAGTAAATCTCTGCTGGCCCCTGCTATTCAAGAGCTCATTAAGATGATATTTGACGTGGAGTCCATGAAAAAAACTCTGATTGAGTTTGAAATTGACTTGAAGAAGATGCCGTTGGGAAAACTAACAAAACGACAAATTGAAACTGCGTATGCTGTACTAGGGGAAGCGCAGAAACTTATTTCAGACGGTAGAACCTCCAGTTCTCTCCTGGATGCGTCAAACAGATTTTATACATTGATTCCTCATGACTTTGGAATGAAGAAGCCGCCATTGCTAGACAACTTAGAACTTATCAAGACTAAAGTCGGAATGTTGGATAACCTCCTTGACATCGAAGTGGCCTACAGTTTGTTGAAGAGTGGAGAAGATGATCTAGCCAAGGATCCATTAGATGTAAACTACGAAAAATTGAAAACAGATTTGGAGGTTCTTGCAAAGGATTCGAAGGAATTTTCCCTTATCGACGAGTACGTAAAGAACACACATGCGGAAACTCATAAGCAATACGAATTGAATGTACTCGAGGTATTCAAGGTGAACCGTCATGGCGAAGTAGACCGTTTCCAACCCTTCAAAGAACTTCACAACCGTCGCTTGCTGTGGCATGGCTCCCGCACCACAAACTATGCTGGCATCTTGTCTCAGGGTCTTCGGATTGCGCCGCCCGAGGCTCCAGTGACGGGTTACATGTTTGGTAAAGGTGTCTATTTTGCAGATATGGTGTCGAAGTCCGCAAACTACTGTCGCACAACACCTTCGGACAACATCGGACTGTTGATGCTCTGTGAAGTGGCTTTGGGAAATATGCATGAACTGCTGGATGCTGACAATATCGTGAAACTTCCCAAAGGGAAACACAGCGTCAAGGGGTGTGGTCGAACGGGTCCCGATCCCGCTTCTGATGTCACATTAAAGGATGGTACAGTTGTTCCATGTGGGAAAGGAACCAAAACGACTGTTTCGAACTCAAGTCTGCTCTACAACGAATATATTGTGTATGATGTTGCACAGATCAACATCAAGTACTTGCTGAAAGTGGAGTTCAAGTACAAATATGGATTTTAA

Transcript

amic_s0140.g15.t2

TTACTTCTTCACTACACCAGTGAACAACAACCGGAAATGCGCTAGTCACTCACGCTGTCTGCAAACTGGAACACAATAATTTTGGCGCTAAATTCTAACCAATCAACAATCGAGTTTTCAGCTGACCAAGAAAGACGCGAGCAGTTCGAAACCCAAAATGGCCGAAGACCTTCCATTCAAAGCAGAGTACGCGAAATCAAATAGATCTTCTTGCAAGCTATGCAGGGAAAAAATAGCGAAGGACAGCCTTAGAGTTGCAAAGATGGTACAGTCACCCCACTTTGATGGCAAGGTGCCAAACTGGTTTCATTTCAGTTGCTTCTTTAGAAAACAAAAGGTGAAAAACTGGACCGACATTTGGGGATTTGATTCTCTACGGTGGGAGGACCAAGAAAAAGTGAAAGCAAAAATTGAAGGGGGAGGGGGTGGAGGGAATGAAGCACCTTCAGCTGATGCTCTGGAAAATGGTGTCGCAGATGATCTGTTAGTGGAGTATGCAAAATCTAACCGCAGTAAATGCAAAAACTGCAAAGAACAGATTGACAAAGGAGAAATTCGACTTGCAAAAGTTCAGGAACCTGATGCAGAATCTAATGCGCCTGCAGGAATGGCAATCCCCTGGTGGCATCACGTTGACTGCTTTGTTCAATGCAGGGAGTCTTTGTCGGTGGACTCCAGTGTAACAGGGGAATCTTTCACTGGCTTTACCAAGCTAAATAAAGAAGATAAAGCTTTGCTGAAGAGAAAGCTTGGAAAAGGAGCAAAGACAAAGGGGAAAGGTAGCAAACGAAAGGCAGTGGCAGTGGATGAAACAGATTCAAAAAGGAAGAAGATTGCTGAAGAAGATGAAATACAGAAACAGCTGAAGGAACAAAGTAAGCGTTTGTGGAAGGTTAGGGATGATTTACAGAAGAATTGTTCTTCGCAAGAGTTGAAAGAGATGTTGGAGGACAATGGAATGTCGACACATGGAGGGGAAAGCTTTTTGCTTGACAGATGCTCTGATGGGATGAGGTTTGGACGGCTGCTTCCTTGTGAAGAATGCAGTGGCGGTCAACTGGTGTACAGAACTGAAGGATATTGCTGCACTGGTAATTTAACAGCATGGACCAAGTGTATGTTTGTTACAAAGGACCCAAAACGAGCTTCATGGAAAATTTCCGATGATCTGAAAGAAGCTTCCGATTTTCTGAAAAACTTTAAATGCAAGAAAAGGCAGAGGATCTTCCCTACAATTTCTGCTTCCACCACAGCGTCACCCAAAAGAATCAAATCAGAGGCCATTGAAGCAAACAATGCTCAAGTTGTCTCTGCTTTATCCCCTGAAAAGCCTCTTTCTGGAATGACATTGGCTGTCATAGGAAGACTTAAACAGAACAAGGGAAAACTTTCCACAGCTATTGAAGATCTTGGTGGATCAGTAGTAGAAAAAGTCAATAATTCAGTGGACTGTTGCATCAGCTCTCAAGCTGAAGTTGACAAGAAGAGTAAGAAAATGCAAGATGCTGAACGGTTTGATGTTCCAGTTGTGAGTGAAGATTACCTCGAGGCAGTCAAAAAGGGCAGGGCCAGATCAATGATCACGCAGCATAGCATTGCATCCTGGGGAAACAATAAGGCTGCTAGTGCTGTGGATGGAGCCGTTGTGTCCAATGGCAGCGGTTCAAAGGTCATGAAAAGTGGTCTTGAAGGAGGATCCGCCATGAAAATGAAGATTGCTGTTAAAGGAGGGGCCGCTGTAGACCCGGATTCAGAGATGGAAGACAGGTGTCACGTGTTTCAAGAGAATGGCAATATTTACAGCGCAACTTTGGGTTTAGTGGACATTGTCCGAGGCGCAAATTCTTATTACAAACTTCAGTTGTTAAAAGACGATAAAAAGAATTCTTATCATCTTTTCCGTTCTTGGGGAAGAGTTGGAACACACATTGGAGGAACTAAATTGGAGCGGTGTGACTCAAAGGCAGACGCCATTCGGAGCTTTTTGAATTTGTATGGCGAGAAAACAGGAAACAGCTGGGAAGACAGGAAGAATTTCGTGAAGCGCCCAAACAAGTTCTATCCGCTAGAGATCGACTATGGCCAGGATAATGAGGAACTCAAGTCGTCCATTGCAGCCGGAAGTAAATCTCTGCTGGCCCCTGCTATTCAAGAGCTCATTAAGATGATATTTGACGTGGAGTCCATGAAAAAAACTCTGATTGAGTTTGAAATTGACTTGAAGAAGATGCCGTTGGGAAAACTAACAAAACGACAAATTGAAACTGCGTATGCTGTACTAGGGGAAGCGCAGAAACTTATTTCAGACGGTAGAACCTCCAGTTCTCTCCTGGATGCGTCAAACAGATTTTATACATTGATTCCTCATGACTTTGGAATGAAGAAGCCGCCATTGCTAGACAACTTAGAACTTATCAAGACTAAAGTCGGAATGTTGGATAACCTCCTTGACATCGAAGTGGCCTACAGTTTGTTGAAGAGTGGAGAAGATGATCTAGCCAAGGATCCATTAGATGTAAACTACGAAAAATTGAAAACAGATTTGGAGGTTCTTGCAAAGGATTCGAAGGAATTTTCCCTTATCGACGAGTACGTAAAGAACACACATGCGGAAACTCATAAGCAATACGAATTGAATGTACTCGAGGTATTCAAGGTGAACCGTCATGGCGAAGTAGACCGTTTCCAACCCTTCAAAGAACTTCACAACCGTCGCTTGCTGTGGCATGGCTCCCGCACCACAAACTATGCTGGCATCTTGTCTCAGGGTCTTCGGATTGCGCCGCCCGAGGCTCCAGTGACGGGTTACATGTTTGGTAAAGGTGTCTATTTTGCAGATATGGTGTCGAAGTCCGCAAACTACTGTCGCACAACACCTTCGGACAACATCGGACTGTTGATGCTCTGTGAAGTGGCTTTGGGAAATATGCATGAACTGCTGGATGCTGACAATATCGTGAAACTTCCCAAAGGGAAACACAGCGTCAAGGGGTGTGGTCGAACGGGTCCCGATCCCGCTTCTGATGTCACATTAAAGGATGGTACAGTTGTTCCATGTGGGAAAGGAACCAAAACGACTGTTTCGAACTCAAGTCTGCTCTACAACGAATATATTGTGTATGATGTTGCACAGATCAACATCAAGTACTTGCTGAAAGTGGAGTTCAAGTACAAATATGGATTTTAAACCTCGGTGATCCACCGAGTACAAAAGAAAAGGAATACAAAAAAAAAAGTGGGAAATCCCACGTTCTTTACTGACAATAACATTCTGTGCGGTTTTGGTGTTTTGTTTTGTTTTCTGTCTAATTGTTGGAGGTGTTATTGTTAAGAAAGGTAGCTGAAAGTTGAGTTCTTTAATTTCAAACGATATCGCTGAAAAGCATGAAAGAAAGTATTTTAATAGCAATCAGTGTTTAACTATGCATCTGAATTGACGTAGTTATACATTTATGACTGAATAAATATGAGTTGATTCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P26446	Poly [ADP-ribose] polymerase 1 OS=Gallus gallus OX=9031 GN=PARP1 PE=1 SV=2
P31669	Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis OX=8355 GN=parp1 PE=2 SV=1
P09874	Poly [ADP-ribose] polymerase 1 OS=Homo sapiens OX=9606 GN=PARP1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001433 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02877 all species →	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF00644 all species →	PARP	Poly(ADP-ribose) polymerase catalytic domain	Family	Interproscan
PF00645 all species →	zf-PARP	Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region	Domain	Interproscan
PF21728 all species →	PADR1_N	PADR1, N-terminal helical domain	Domain	Interproscan
PF08063 all species →	PADR1_Zn_ribbon	PADR1 domain, zinc ribbon fold	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF05406 all species →	WGR	WGR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004102 all species →	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR036616 all species →	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR036957 all species →	Homologous_superfamily	Zinc finger, PARP-type superfamily	Interproscan
IPR001510 all species →	Domain	Zinc finger, PARP-type	Interproscan
IPR012317 all species →	Domain	Poly(ADP-ribose) polymerase, catalytic domain	Interproscan
IPR008893 all species →	Domain	WGR domain	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR049296 all species →	Domain	PARP1-like, PADR1 domain, N-terminal helical subdomain	Interproscan
IPR050800 all species →	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan
IPR038650 all species →	Homologous_superfamily	PADR1, C-terminal domain superfamily	Interproscan
IPR012982 all species →	Domain	PARP1-like, PADR1 domain, zinc ribbon fold	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR036930 all species →	Homologous_superfamily	WGR domain superfamily	Interproscan
IPR008288 all species →	Family	Poly [ADP-ribose] polymerase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10459 all species →	DNA LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24070	PARP1; poly [ADP-ribose] polymerase 1	EC:2.4.2.30	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.