Gene detail

Detailed information of amic_s0140.g24.t1 in Acropora microphthalma

Genomic Location: sc0000140_pilon:339193...348165
NR annotation: XP_029211708.2, reticulon-1-A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0140.g24.t1

CGTGAAAAATTGCGCCAGTGTAATTTTGAAAATATCGAAGAACCATCATTTCTAAATTTTCCCACTTTTCTCATTATCCTTGCGTAATATTCAATCTCCTAGACTTTGTTGCTCAATATAAACCTGTCTTTCAGGTGAATTATAAGCTTAAGTTTCTCTTAGATATTTCTCTTAAAAATGGCGGATTCAAATGTCTCAGGCACAGATGAAGGCAATTTGTTGGATTTCGATCCAGTTCCCAGCGAAGATGTTTCTTCGACAACACCACCTATAGACGAACCAAAGATAGAGGACGAATTTCCCTCACCAGCTGAAGAAAACGAACTGGATGAAAAAGAAGAAACGCCTGCTGTGGAAGATCTTCCGACGGTGAAAACAGATTCAGATGAAAAACCTGAAGATTCGACTTCTACAACTAAAGAGCTCACGAGCTGGCCAGCGATATGGATGAAAGAACGTGGAGTTGATCAAAGAGTTATCGATCTGATCTACTGGAAGTGCATGAAGAAGACTGGTGTGGTTTTTGGCCTTGGTTTGGTGCTGTTGTTTTCGCTGACAATGTACACATTCCTGAGTGTGGTAACATTCTTTTCCATGGCACTTTTGACAGTTTCACTGCTTTACAGAGTTGGCATGACTGTAATGGGTGCAATCCAGAAGACAGGAACTGATAATCCCTTCAAGACTATTCTTGAAAAAGATGTTGATATTCCCAAAGATAAGGCTGTGGAGGTTGTAGAGGCTTGTGTTGATCAAATTAACTGCCTTACTAAGGAACTGAAGCGCCTGTTCTTAGTAGAAGATATCATTGACTCCATCAAGtttGGACTTCTGTTGTGGGTCTTATCATATGTTGGGGCTTGGTTTAATGCGCTAACTCTTGTTATCATTGATGTAATCATCCTGTTTACCATACCTCGTTTGTATGAGGATCACCAGGATAAGATTGACCAGTTCTTGAAACAGGCCCGCACTCAGATTTGTGCATTAATCAACCAGGCAAAGGCCAAACTTCCAGCGAAGTTGCAGAAGCAAAAGGCATCGTAAGCTGGGAGCTTTGCGCGTACAGAAACATGCCCAGTGACTGAATGTTTGATTTTCAAGTGTCCTTCAAATCCAACTCTGTGTCTTTTCTCTCAATTTGACTGCTTTATTTGTGTATAGCAGCCGTGTGAGTCTTGGGGTCATTTAAAGGAAATTGTTTGAGTTTTGAAGCCGAATATGGTCAATAGTTGCGTTTGAAGTGGTTTTAAACTGGGACATCCTCAATATTGATTGTAGGTCATGGAAAAAATGACATTGTACATTTGTCATGTGAATACACTGTAATTATTTAAATAATATTGCGGTTGGAATTGCTAGTGCAGTTTAGCGGAGAAGTTAAAGAAATCCCTTGCATTTCTTGCTTCCAAGACTGCCAGGGTTTCAGTAGTGATGCAAGAATGTGCACAAGCAGCATTCACAGACCCATTGCGTTGTTATCCATGTTTTTATTTGCCTCAACTTTTACTAATGTTCATGATTCTTGGATTGCTACCGGAAACCAGCCCTTTCGTTTTTTTTCTTTCCAATAGTAAACAAAATCAGGAATTAGTGTCGATTAATAGCAACGCCTGATGATCTTTTGCTTTGGTTTCTTAATTTAGTAGCGCGGGATTTGACAAATACTATAGAAACCTCTCCAGGGGTAGTCATTTATTATCATGGAGGGAAGGCATAAACATAACATTGACAGCCAGAGATGTCCAGTAATGGTGCCAATCTGCGGCATAGCCTACTTGATTACAAGGATTCGTTAGATACAAAAGGAGTGGTTGAATTATGGATAAAATGAATTTTTGCAATCCTTACTGAGTTGTTGGAATCAATCAATGCTAACTCAGGAACATACCAACATTAACTTGCCAAAGATGTGAACACCTAGTGACTTGCATAATACTATTTGTTTTTTCTGATAATAACCATTACAATAAACTGGTCAATTTTTAGTGATCACTGTTAAAGACAGCGCTCAATACACAAAAAGCTTGGTAACGTTTCACTGCCTGATGGAGCGTGTTAGGATTGCGCCAAGATCTTGGTTGTAAATGCATCCGTAATACTTGACAGATGCTTTACCTTGTTCTATTCTCAGCGTACTAACTTATAACTCGTGCCCATAGGTTAAGGCTGTATTTATCTTATGCAATGCAAATTAAAGGTATAGATCGTAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5J6M8	Reticulon-3-A OS=Xenopus laevis OX=8355 GN=rtn3-a PE=2 SV=2
Q6IFY7	Reticulon-1-A OS=Xenopus laevis OX=8355 GN=rtn1-a PE=2 SV=1
Q16799	Reticulon-1 OS=Homo sapiens OX=9606 GN=RTN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002018 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02453 all species →	Reticulon	Reticulon	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003388 all species →	Domain	Reticulon	Interproscan
IPR046964 all species →	Family	Reticulon 1-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45799 all species →	RETICULON-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0030424 all species →	Cellular Component	axon	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20721	RTN1; reticulon-1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.