Detailed information of amic_s0140.g30.t1 in Acropora microphthalma

Genomic Location: sc0000140_pilon:378356...399455
NR annotation: XP_044162800.1, spermatogenesis-defective protein 39 homolog isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9H9C1Spermatogenesis-defective protein 39 homolog OS=Homo sapiens OX=9606 GN=VIPAS39 PE=1 SV=1
Q8BGQ1Spermatogenesis-defective protein 39 homolog OS=Mus musculus OX=10090 GN=Vipas39 PE=1 SV=1
Q5TYV4Spermatogenesis-defective protein 39 homolog OS=Danio rerio OX=7955 GN=vipas39 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004703 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04840
all species →		Vps16_CVps16, C-terminal regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040057
all species →		FamilySpermatogenesis-defective protein 39Interproscan
IPR006925
all species →		DomainVps16, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13364
all species →		DEFECTIVE SPERMATOGENESIS PROTEIN 39Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0007034
all species →		Biological Processvacuolar transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23287VIPAS39, VPS16B; VPS33B-interacting protein in polarity and apical restriction-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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