Gene detail

Detailed information of amic_s0142.g26.t1 in Acropora microphthalma

Genomic Location: sc0000142_pilon:629757...634501
NR annotation: XP_044183157.1, 40S ribosomal protein S15-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
G1U0Q2	Small ribosomal subunit protein uS19 OS=Oryctolagus cuniculus OX=9986 GN=RPS15 PE=1 SV=1
P62846	Small ribosomal subunit protein uS19 OS=Gallus gallus OX=9031 GN=RPS15 PE=1 SV=2
P62841	Small ribosomal subunit protein uS19 OS=Homo sapiens OX=9606 GN=RPS15 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008424 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00203 all species →	Ribosomal_S19	Ribosomal protein S19	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020934 all species →	Conserved_site	Small ribosomal subunit protein uS19, conserved site	Interproscan
IPR002222 all species →	Family	Small ribosomal subunit protein uS19	Interproscan
IPR005713 all species →	Family	Small ribosomal subunit protein uS19, eukaryotic/archaeal	Interproscan
IPR023575 all species →	Homologous_superfamily	Small ribosomal subunit protein uS19, superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11880 all species →	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02958	RP-S15e, RPS15; small subunit ribosomal protein S15e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.