Gene detail

Detailed information of amic_s0143.g40.t1 in Acropora microphthalma

Genomic Location: sc0000143_pilon:529161...531465
NR annotation: XP_015775599.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like isoform X1 [Acropora digitifera]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0143.g40.t1

ATGGAATCGCTGTTGGGAAACTTGGAAAAATATCTTAAATGTCCGATTTGTTTGGGTACTTTTACTGAGCCTAAGACCATACAATGCCTGCACACATTCTGTCGTGACTGTTTAGCGAAACATGCTCGGAAAACTCAACAACAAGGAATATTTCAGTGCCCTGAGTGCCAGGCGCAATTAGGCGTCCCTGAATGCTTCGATAAGTTACCAACGGGTTTTCTGCAAAACAGGCTGCTTGGTATTTTCAATGTACGCGTAGACAGAGATAGCTGGGAGATCGATTGCGGGAACTGCAGGAAAGACAGCGCCGAAAGTTTCTGCTTCGACTGCGGAATATTCATGTGCCCTAATTGTTGTAGCGCTCACGAAATTCTGAGAAATACGGCCTTTAAAGACCATAAAGTCAGAGCAATTGACCATTTCAAGCCCGAAGACTACGGCGCTCTTCTCAAGCGACAGAGATTTTGCTCCCAGCAGCATCACGAGCGAGAAATAACGAGGTTTTTCTGCGTCGACTGCGAGACTTGTGTGTGTCAGATCTGCATAATTATGGAACACAAAGATCATTCGATTGAGGCCCTTGACAAAGTAGCTGATAATGAGAAATCAAAAATCATGGCGGAAGTCAACTCAATGAAAGAAAGAAACAGAGCTTGCAGTGATGCAGTTCGCGAGTTAGAGAAGACAGCTACTGATTTGGAAAGTAACATCAAGGCTACTAAGGATAGAATCTCCCAAACAGCCAACCAAATGGTTGCTACTCTTCGAAAACGAGAGCAAGAGGCCATTGTGGCCCTGAATCACACACTCGTGACCAAAATGGAGAAATTAAACGAAACGAAGAATCAAATCCTGTCCTTGCAAAAGCAAATAAATCAAGCAAGAGAGTTTGCCTTTACTTTGGTTGAAAGAAGTTCGAGCTCAGATATTGTACGAAACAAAGGAACTTTGGAGAACCGTTTTGAAGATCTGAAGAAGACTGCAATTCCAGCCGTTTCGGTAGGTTCATTTCTGACGTTTGTGCCAGTTGAACCAGAGAACTTATCCATCGGTGTTATCGCCACCAGCAATTTAACTATTGAAGGCCTGGCTCAAGATTTTCAAGCTGGAGTCGAAGCACAGTTTGTCATTGATTCTAAACTAGAGAAAGATGTGAGAAACCTTGAACTTATCGTGAAACCCACGAAACAAGTAGGAAGTTTGATCACAAGTGAAAACAAAGATGGAACTTTCCTGGCGAAAATTGTGCCCAAATTTCCTGGTACGTACAAGTTAAACGTTTCAAGACAGGGCGAAAAGCTTCACGAGAGACCATTCACATTCCAGGTTCAGGAGCGACGGCTTGAAGTTGTGGGAGAATTGGATTTACACGGGGAAACTCTTGAGGGTCCTGCTGGGGTTGCCGTGAATAGCAAAGGTCTCATTGTTGTCGCTGATTATAAAGGGGACCGCGTCCTGATGTTTGACACGCATGGGAAGTGTCTTTGTAAATTTGGATGTAAAGGAGACTATGTTGGTCAGCTTAATTCTCCATGTGGAGTGACTTTTCTTGATGACCACAATATTCTTGTAGCCGATGAACTAAATCACCGTGTACAACAATTTGATGTACAGACAGGAGATGTTGTGAAGGTGTTTGGCGAGAAGGGATCAAAAAATGGTCAACTCCTAAATCCAACAGGCGTTTGCATAGATGATGAAGGACGTGTGATCGTTGCTGATTTTTTTAACAGCCGAATTCAGGTCTTTTCGAAGGATGGCAAACCAGTACTTCGATTTGGAAATAATAGCCCCGGCAATTTGAATCATCCCTTCGACTGCATTTTTCATGGAAACAATTTTATTGTTTCGGATGCACACAGCCACTGCTTAAAAGTCTTTGATCGCTCAGGACGATTTCTGCACAAGATTGGAAAACAAGGGAACCAGGATGGACGTCTGAGGAAACCTTCGGGTTTGTGCATGGAGAAATGTAACATTCTTGTTTGCAATAGAGGCAATAACACAATTGATCAGTTTTCAGTTGAAGGTTCGTTTACCGGAAAAACCGTTGTTGAGTTCCCAGATCCTTGTGGAATCGCCACAACACCAAATGATGAGCGGATTTTAGTAACCAGTCATGAAGAGAACAAAGTTTTCATTTTGAAATAA

Transcript

amic_s0143.g40.t1

GTGTTTGAGTAACATTCCCTGCAAGCTTGGCATTAGAGATGGAATCGCTGTTGGGAAACTTGGAAAAATATCTTAAATGTCCGATTTGTTTGGGTACTTTTACTGAGCCTAAGACCATACAATGCCTGCACACATTCTGTCGTGACTGTTTAGCGAAACATGCTCGGAAAACTCAACAACAAGGAATATTTCAGTGCCCTGAGTGCCAGGCGCAATTAGGCGTCCCTGAATGCTTCGATAAGTTACCAACGGGTTTTCTGCAAAACAGGCTGCTTGGTATTTTCAATGTACGCGTAGACAGAGATAGCTGGGAGATCGATTGCGGGAACTGCAGGAAAGACAGCGCCGAAAGTTTCTGCTTCGACTGCGGAATATTCATGTGCCCTAATTGTTGTAGCGCTCACGAAATTCTGAGAAATACGGCCTTTAAAGACCATAAAGTCAGAGCAATTGACCATTTCAAGCCCGAAGACTACGGCGCTCTTCTCAAGCGACAGAGATTTTGCTCCCAGCAGCATCACGAGCGAGAAATAACGAGGTTTTTCTGCGTCGACTGCGAGACTTGTGTGTGTCAGATCTGCATAATTATGGAACACAAAGATCATTCGATTGAGGCCCTTGACAAAGTAGCTGATAATGAGAAATCAAAAATCATGGCGGAAGTCAACTCAATGAAAGAAAGAAACAGAGCTTGCAGTGATGCAGTTCGCGAGTTAGAGAAGACAGCTACTGATTTGGAAAGTAACATCAAGGCTACTAAGGATAGAATCTCCCAAACAGCCAACCAAATGGTTGCTACTCTTCGAAAACGAGAGCAAGAGGCCATTGTGGCCCTGAATCACACACTCGTGACCAAAATGGAGAAATTAAACGAAACGAAGAATCAAATCCTGTCCTTGCAAAAGCAAATAAATCAAGCAAGAGAGTTTGCCTTTACTTTGGTTGAAAGAAGTTCGAGCTCAGATATTGTACGAAACAAAGGAACTTTGGAGAACCGTTTTGAAGATCTGAAGAAGACTGCAATTCCAGCCGTTTCGGTAGGTTCATTTCTGACGTTTGTGCCAGTTGAACCAGAGAACTTATCCATCGGTGTTATCGCCACCAGCAATTTAACTATTGAAGGCCTGGCTCAAGATTTTCAAGCTGGAGTCGAAGCACAGTTTGTCATTGATTCTAAACTAGAGAAAGATGTGAGAAACCTTGAACTTATCGTGAAACCCACGAAACAAGTAGGAAGTTTGATCACAAGTGAAAACAAAGATGGAACTTTCCTGGCGAAAATTGTGCCCAAATTTCCTGGTACGTACAAGTTAAACGTTTCAAGACAGGGCGAAAAGCTTCACGAGAGACCATTCACATTCCAGGTTCAGGAGCGACGGCTTGAAGTTGTGGGAGAATTGGATTTACACGGGGAAACTCTTGAGGGTCCTGCTGGGGTTGCCGTGAATAGCAAAGGTCTCATTGTTGTCGCTGATTATAAAGGGGACCGCGTCCTGATGTTTGACACGCATGGGAAGTGTCTTTGTAAATTTGGATGTAAAGGAGACTATGTTGGTCAGCTTAATTCTCCATGTGGAGTGACTTTTCTTGATGACCACAATATTCTTGTAGCCGATGAACTAAATCACCGTGTACAACAATTTGATGTACAGACAGGAGATGTTGTGAAGGTGTTTGGCGAGAAGGGATCAAAAAATGGTCAACTCCTAAATCCAACAGGCGTTTGCATAGATGATGAAGGACGTGTGATCGTTGCTGATTTTTTTAACAGCCGAATTCAGGTCTTTTCGAAGGATGGCAAACCAGTACTTCGATTTGGAAATAATAGCCCCGGCAATTTGAATCATCCCTTCGACTGCATTTTTCATGGAAACAATTTTATTGTTTCGGATGCACACAGCCACTGCTTAAAAGTCTTTGATCGCTCAGGACGATTTCTGCACAAGATTGGAAAACAAGGGAACCAGGATGGACGTCTGAGGAAACCTTCGGGTTTGTGCATGGAGAAATGTAACATTCTTGTTTGCAATAGAGGCAATAACACAATTGATCAGTTTTCAGTTGAAGGTTCGTTTACCGGAAAAACCGTTGTTGAGTTCCCAGATCCTTGTGGAATCGCCACAACACCAAATGATGAGCGGATTTTAGTAACCAGTCATGAAGAGAACAAAGTTTTCATTTTGAAATAAACATGCATAAACAAAAATGGATTTAAGTTTTCGATTAAGAATGTCGTTTCATTTATCAATTAAACCATGGCCATGCAACGACAAAAGAGGGGGCAGAATACAATATTAATTGTTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000277 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0006513 all species →	Biological Process	protein monoubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0143.g40.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.