Gene detail

Detailed information of amic_s0143.g45.t1 in Acropora microphthalma

Genomic Location: sc0000143_pilon:569671...579950
NR annotation: XP_029189972.2, caprin-1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0143.g45.t1

CAGTTGAGGATTGAACTTGTAACTCGGGTGTGCAGTGACAATTATGCCAAGTGCTTCATCTAAATCTTCCCTACAGCCTCCAGCTTCGATGGAGATTAACGACATAGCCGAAGACATGGTGCAGGTCTTGACGAGAAAACTCCGCAACATGGAAAGACGCAAGTCGAAACTGGATTCGTACAAGAAACAGGTGGAGGAAGGCAAACTGCTGAACGAGGACCAAATAAATGCAGTTGGCCAGTTGGATAATTTGAAACTTAATCTGGACTTTGGCCGTGAGCTATTGAAGAGCTTCACTGATCACCTGACTGAGCATCAAAAGCTACAAGCCAAACTTGCGAAGAAGGAATCTGCCATGCAACGTGAAAATGACATTGCCAAAGTGTGTCAGGTACTGGAACTACAATCCTTGATGGACAACTTGTCAGAAGATGTGCGGGCAGACTTTTTAAGTGGAACCAATGGGGCTGTGGAGGTGACATCAGAAAGTTTTGATCAAATTGATGAATTTTACAAGCTAATTACCCCAAATCCTGATGATGAGAAACCAATGAAGGAGCAACAACGCAGTGCTAGTGAGCATATTGTGAAGTTTATCAATTCCAACAGTGGACCTGTTGTGGGGACAACATACAAACTGCTGAATGAGTTGGTGACATCAATCAAGGAGTGTGCATATTTCGACCCATCCAAAGCAAGCGAGGAGGAGgaagaagaagaagaagaagaagaagCAGCATTAGAGACAGAGGAGGGAGCTGTTGAAGATGAAGATAATGCTCAAGAACAAGAAGAATCTGCTAACAAAGAGATACCAGTACCTGAGGACCAAGCAGTTGAGACCATTAATGGCAGAACAGAAAACCTTTTGTATGGTGACAGTGCTTTGGCATCTGACTCAAAGGATGTGACAACATTTGCCTCCAATGAACATGGCCTGAATTTCCTCAGTGAATCAGAAGTGGAATCAAAGCCGCAGATGGCAGCGGAACCTCTGCCACCAGTTGAAAATCAAACTCCAGTTACTCCTGTTGAGGACATGGGGTTTGTTGCTCAGGGGGAAGGTAAAAGTTGGGCCGAGCAGGGGGCCATTGGCAATCAACGAAATGACAGTGGTGGTTTTGACTCGGCGCAGCATTCTAATGGATTTTCACGGGGCAGCCGTGGAGGTCGTGGAGGTTTCCGCAGGGGAGACGGAGGGTTTTTTCGCCGTGGAGGTCCATCAGGTGAAAGAGGAAATAGGCGTGGTGGTCGAGGTGGGTTTGGTGGAAACCCAAGAGGAGGAAGAGGTGGATTTGGACCGCAACAGGATAATTATCGTGGAACAGGAAGAGGTGGACGCGGGGGCCCTCCTAGGGGAGGACGCGGAGGCCAGCGTGGACGTGGACCCCCTCAGTAAAAATTATTGTCGCACTTAATTTTGACGCTTAACTTCAGCGATGTTAGGAAGATTTTGATGGAGCTTTTGGCATAAAGTTACGGCAACTAACCTAGTTACAAGCTTGTAGGCTTGTCCTGGAGATCCTGTGCATGTGTGGTGTGATATGACCTGTGGCACGTGAGGGGAGGATTATCTTGCCAAGATAGATGAGAGTTCTTTAATTGGGATAATCCTTTAAAGTACACAAGACTTGTCGTCACCAAGAGTTTGGCAGACTAATCTGTTCCAGAAAGACTTGAAATCAGGAAAAGATAGCATTTGAATTATTTTTGCGGGCAAAATGGTTGTGTTTTGATGCATCAATAAGTCAGTTCAGAGTTTCGGATAGAAAATGCGCAAGATCAGAAATTATTTGTTCATGATTAGCTTTTGCCTTGAACTTGTTGAAGTGTGGAAGAAACTCGTTGCCTTTTTTTACGGAAGTGGAAAATGAAAAGAAAAAAACAGTCCAAGATAGAAAGATAAACCTTTGTGAATGCTTGGTATTACAATAACTGTTAGTTGGCATTAATTCGTATTGCAGTGTAAAACATCGTCATCAAACATTTTGATATATGAGTAATTTACAGGGTTGGAAGATCTAACAATATCGCGACTCTGGAACATGTTCCCTTGTTAGTTTTGGACGAAGAGGAAACCTAACACGCAAGTGAAACTTCCATTCTCTTAACTGTTGAATGTAGGCAAGTGAAATGGGTTGCTTCAACAGACGTTTATTATTTTGCAGTACTTGTAAGATTCCGAACTTTGTATACAAGAGGAACTGTTAATCGTGGAACTTTGCATGGTTCGGAAAAATACGATGCTATACAAATGGACAGAATTGTTAAAAATGAAACGACTGACTGTTGTCAAGTAAAAAGAATAAAGTACTTGGTAATTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14444	Caprin-1 OS=Homo sapiens OX=9606 GN=CAPRIN1 PE=1 SV=2
Q1LZB6	Caprin-1 OS=Bos taurus OX=9913 GN=CAPRIN1 PE=2 SV=1
Q60865	Caprin-1 OS=Mus musculus OX=10090 GN=Caprin1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007303 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18293 all species →	Caprin-1_dimer	Caprin-1 dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041637 all species →	Domain	Caprin-1 dimerization domain	Interproscan
IPR028816 all species →	Family	Caprin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22922 all species →	GPI-ANCHORED PROTEIN P137	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18743	CAPRIN1, GPIAP1; caprin-1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.