Detailed information of amic_s0143.g54.t2 in Acropora microphthalma

Genomic Location: sc0000143_pilon:656211...671418
NR annotation: XP_029190000.1, lamin-L(I)-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P05786Keratin, type II cytoskeletal 8 OS=Bos taurus OX=9913 GN=KRT8 PE=2 SV=3
P02541Desmin OS=Mesocricetus auratus OX=10036 GN=DES PE=2 SV=2
P31001Desmin OS=Mus musculus OX=10090 GN=Des PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002850 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00038
all species →
FilamentIntermediate filament proteinCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039008
all species →
DomainIntermediate filament, rod domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45721
all species →
LAMIN DM0-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005200
all species →
Molecular Functionstructural constituent of cytoskeletonInterproscan
GO:0005635
all species →
Cellular Componentnuclear envelopeInterproscan
GO:0005652
all species →
Cellular Componentnuclear laminaInterproscan
GO:0006998
all species →
Biological Processnuclear envelope organizationInterproscan
GO:0007097
all species →
Biological Processnuclear migrationInterproscan
GO:0031507
all species →
Biological Processheterochromatin formationInterproscan
GO:0051664
all species →
Biological Processnuclear pore localizationInterproscan
GO:0090435
all species →
Biological Processprotein localization to nuclear envelopeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0143.g54.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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