Gene detail

Detailed information of amic_s0144.g51.t3 in Acropora microphthalma

Genomic Location: sc0000144_pilon:819713...837727
NR annotation: XP_044184490.1, myotubularin-related protein 13-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0144.g51.t3

ATGTCCCGTCTTGCGGATTATTTTGTCGTTTGTGGGATAGACAGGGACTCACAGAATGATGAAGTAAAAGGAAAAGTAATTCAACGTTTTCCGAGCAAAGACCGAAAAGATGCAACTTTTCCGGAGGGAATTGAATTGTTTTGCCAGCCCGGAGGATGGAATTATTCCCACTACTGCAAGCCTCCAACGTTTTTTGTGGCAGTGTTTACTGACATGGAGGGTGACCATCGTTACTGTGCCTGCTTCACGTTCTATGAAAAATGTAGCCTAACAAAGTCACTGACACGACCAGCAAGGAAGGATGCTGTTAAAGATGGTAGCCAGTCTGATTCATCTATGTCTGACAAGCATATTTCTGATGCTTTACTTGGTATATCTGTCATTACTGACGAAGTTCCCTTGGATACGTTTGCTCCAAAATGCTTGGTCCTTGTTTCAAGAGCAAGTTATTTTGAAGTGTTCAAGAATTGTCTCACAACTATCTATTTATCATTCCTTTCTGGAAACACCAAATCTTTGGAAGGATTAGTTGGCTGCATCCTAGGCTTTGTTCAAGTCCCTCCCCCTGGTGGACCTAAGATGACATTTTCCATGGGGGCTGGTGATCGTCAGACTCTGTCACCCCCTGTCTCAGAGACGCTTCCAGTGACTGGCAAATCTGTAGCTATTCTCTTCAATCAGTTAGGCATCCACAATATGTTGTCCCTTTTCTGTGCACTGTTGACAGAAAACAAGATCTTGTTCTATTCTAGCAGTTATTCACAATTGACGCATGCCACTCATGCAATGCTGGCATTGATGTACCCACTGAAGTTCAGTTATGTTTTTATTCCAATCCTGCCTGCTGCTTTGCTTGAGTTCTTGAGTGCACCAACACCTTATATTATGGGAGTCCATGAAAGTTACAAAGATGTTGCACCAGACTTGGCTGATGTTATTCTTGTGGATATTGATGGAGGACATATTTTCATCCCTGATGCTATCAACCTTGCTTTGTTGCCGGAGCCATTCTTAGGCAGAACAAGACATGAATTAACCATGGTATTACATCCACAACTTGTGACAGCAGACTGTGCCTTCCAGTCATCAGCAGCCCCATCTGTGCCAATAGTTCAGGACAAGGAATTTCGTGCCGTGTTCGTACGGCTGCTTGGTCAAATGTTTTCGGGTTATCGGTCATGTCTGACTCTGATTAGAATCCATCCAAAGCCAGTCATCACATTTAACAAGGTAGCTTTTCTTGAGTACAGAGGAATGGTGGGAGATCCATTCCTGTCAAAGGTGTTGGACAGCATTTCCTTTCTCTCGTTTGTGGCGACCCGTGGTCCTCCCTACAGAGAATGCGATCTGTTTGACCAGCTCTTAGTTGAGATTGACAATATCCTAGTTAAAGAAGGAGGTTTGGATCCAGATGTACTGGCTAACATTCAGCAGTTGGCACAGAAGCTGTTTGACAATGAACCTTCTTGTGATAATGCTGAAAACAATGTGCAACCATTGGATCTGTCACCTGAAGCTGATTTATACAGCAAGCTTGTATTCCCTACTCTCAGGGAATCGGAAATCAGCCAGCATATAGATCAAGCAGAAAATGTTGGTGCAACATACTCTGTCAGAAGTCTAGAGCCTCGTGTCGTACCTGTGAATGTAGTTTCAAACCGCCAGCAGCATTACATTCCAAGTCGCAAGCTTGAGGTGTTGAGAGACTGTGTTGCATACATCTTTGACAACAAGATTTCTGAGGCCAGAAAGACCCTTCCATCTGTGGTTCGTGCACTGAAATCCAAAGGAGCTCAATTAGCACTGTGCAATGAACTTTCTCTCAGGGTCAAACAGAACAGGTCAATGCTGGAACATGATCAGTTTGATTTGGTTGTGAGACTTATGAACAGTGCCTTGCAGGATGATGCAAGTATGAGTAACACATCTGTGGCTGCAGCACTACTGCCCCTCACAGCCACATTCTGCAGGAAACTCAATGCTGGTGTGCACCAGTTTGCTTACACTTGTGTACAAGATCATCCTGTTTGGGAACGACAACAATTCTGGGAGGAAGCATTTTATGCCGATGTGGAAACACAAATCAAGCAGTTGTATGTTGATGAAGAAGCACCCAAGGCAAATGCTGAAGATACCACGGACAGAGTGCAGCAGCGCATTTCACGGATCAGTTTGACACCCCGTGCAAAGCACCGCAGCTTCTCAAAGAGCAGGGAGAATATTTCCCAGTTGGTGAGGGATTCGGGAAGCTCAAATGAGTTGGAGAACATTGCACAACAAGAGCAGAAGCCAGTTCCAAGTGCATTAAGCATTGCTGCTAAGCAGCTCAAAAAGTGGCCAAATTACAGCAAGATGGAGAAAGATACAAAGATTAACAGTGAGGAAGGCATCGTATACAGTCAGGCAATTCATTATGCCAATCGCATGGTGTACATGAGAATACCATTGGATGCAAGTGAGAAAATGCCTCGCCCTAATCCAACACCAGCAGCAGGAGTACCCTCTGTGGATGGTGAATCTATTAGTGGTACCTATATGGGGAGCATTGCAAATGGTGTTGCTGGGAGTAGTGAAGTAGGCAGTTGCATAACAGACAGTGGAGGGTGGGAAAATTACATGGATGATGAAGACGGAGGAACTATTGCTGACAAAGTCACACGATTTGTCAGCCGATTTGTGGACAGAGTTGGTACAGAAGCTGGAATAAGTCAAGAGCACTTGAAGTCTCTTTACACAATGATTCCAGGAGTTGTTGCCATGCATATAGAGTCATTGGAGCCAGTGCATAGAGAGTACAAAAACCTGGCTCCTATTCAAAAGGAAAAGTGA

Transcript

amic_s0144.g51.t3

GTTCAACCCAGTCCAAGATGGCGTCCAGCAGAAAGGGTGTTCGGTCGTTGCTGCCTACATGACATTCCAGCAAAAGAAATGTCCCGTCTTGCGGATTATTTTGTCGTTTGTGGGATAGACAGGGACTCACAGAATGATGAAGTAAAAGGAAAAGTAATTCAACGTTTTCCGAGCAAAGACCGAAAAGATGCAACTTTTCCGGAGGGAATTGAATTGTTTTGCCAGCCCGGAGGATGGAATTATTCCCACTACTGCAAGCCTCCAACGTTTTTTGTGGCAGTGTTTACTGACATGGAGGGTGACCATCGTTACTGTGCCTGCTTCACGTTCTATGAAAAATGTAGCCTAACAAAGTCACTGACACGACCAGCAAGGAAGGATGCTGTTAAAGATGGTAGCCAGTCTGATTCATCTATGTCTGACAAGCATATTTCTGATGCTTTACTTGGTATATCTGTCATTACTGACGAAGTTCCCTTGGATACGTTTGCTCCAAAATGCTTGGTCCTTGTTTCAAGAGCAAGTTATTTTGAAGTGTTCAAGAATTGTCTCACAACTATCTATTTATCATTCCTTTCTGGAAACACCAAATCTTTGGAAGGATTAGTTGGCTGCATCCTAGGCTTTGTTCAAGTCCCTCCCCCTGGTGGACCTAAGATGACATTTTCCATGGGGGCTGGTGATCGTCAGACTCTGTCACCCCCTGTCTCAGAGACGCTTCCAGTGACTGGCAAATCTGTAGCTATTCTCTTCAATCAGTTAGGCATCCACAATATGTTGTCCCTTTTCTGTGCACTGTTGACAGAAAACAAGATCTTGTTCTATTCTAGCAGTTATTCACAATTGACGCATGCCACTCATGCAATGCTGGCATTGATGTACCCACTGAAGTTCAGTTATGTTTTTATTCCAATCCTGCCTGCTGCTTTGCTTGAGTTCTTGAGTGCACCAACACCTTATATTATGGGAGTCCATGAAAGTTACAAAGATGTTGCACCAGACTTGGCTGATGTTATTCTTGTGGATATTGATGGAGGACATATTTTCATCCCTGATGCTATCAACCTTGCTTTGTTGCCGGAGCCATTCTTAGGCAGAACAAGACATGAATTAACCATGGTATTACATCCACAACTTGTGACAGCAGACTGTGCCTTCCAGTCATCAGCAGCCCCATCTGTGCCAATAGTTCAGGACAAGGAATTTCGTGCCGTGTTCGTACGGCTGCTTGGTCAAATGTTTTCGGGTTATCGGTCATGTCTGACTCTGATTAGAATCCATCCAAAGCCAGTCATCACATTTAACAAGGTAGCTTTTCTTGAGTACAGAGGAATGGTGGGAGATCCATTCCTGTCAAAGGTGTTGGACAGCATTTCCTTTCTCTCGTTTGTGGCGACCCGTGGTCCTCCCTACAGAGAATGCGATCTGTTTGACCAGCTCTTAGTTGAGATTGACAATATCCTAGTTAAAGAAGGAGGTTTGGATCCAGATGTACTGGCTAACATTCAGCAGTTGGCACAGAAGCTGTTTGACAATGAACCTTCTTGTGATAATGCTGAAAACAATGTGCAACCATTGGATCTGTCACCTGAAGCTGATTTATACAGCAAGCTTGTATTCCCTACTCTCAGGGAATCGGAAATCAGCCAGCATATAGATCAAGCAGAAAATGTTGGTGCAACATACTCTGTCAGAAGTCTAGAGCCTCGTGTCGTACCTGTGAATGTAGTTTCAAACCGCCAGCAGCATTACATTCCAAGTCGCAAGCTTGAGGTGTTGAGAGACTGTGTTGCATACATCTTTGACAACAAGATTTCTGAGGCCAGAAAGACCCTTCCATCTGTGGTTCGTGCACTGAAATCCAAAGGAGCTCAATTAGCACTGTGCAATGAACTTTCTCTCAGGGTCAAACAGAACAGGTCAATGCTGGAACATGATCAGTTTGATTTGGTTGTGAGACTTATGAACAGTGCCTTGCAGGATGATGCAAGTATGAGTAACACATCTGTGGCTGCAGCACTACTGCCCCTCACAGCCACATTCTGCAGGAAACTCAATGCTGGTGTGCACCAGTTTGCTTACACTTGTGTACAAGATCATCCTGTTTGGGAACGACAACAATTCTGGGAGGAAGCATTTTATGCCGATGTGGAAACACAAATCAAGCAGTTGTATGTTGATGAAGAAGCACCCAAGGCAAATGCTGAAGATACCACGGACAGAGTGCAGCAGCGCATTTCACGGATCAGTTTGACACCCCGTGCAAAGCACCGCAGCTTCTCAAAGAGCAGGGAGAATATTTCCCAGTTGGTGAGGGATTCGGGAAGCTCAAATGAGTTGGAGAACATTGCACAACAAGAGCAGAAGCCAGTTCCAAGTGCATTAAGCATTGCTGCTAAGCAGCTCAAAAAGTGGCCAAATTACAGCAAGATGGAGAAAGATACAAAGATTAACAGTGAGGAAGGCATCGTATACAGTCAGGCAATTCATTATGCCAATCGCATGGTGTACATGAGAATACCATTGGATGCAAGTGAGAAAATGCCTCGCCCTAATCCAACACCAGCAGCAGGAGTACCCTCTGTGGATGGTGAATCTATTAGTGGTACCTATATGGGGAGCATTGCAAATGGTGTTGCTGGGAGTAGTGAAGTAGGCAGTTGCATAACAGACAGTGGAGGGTGGGAAAATTACATGGATGATGAAGACGGAGGAACTATTGCTGACAAAGTCACACGATTTGTCAGCCGATTTGTGGACAGAGTTGGTACAGAAGCTGGAATAAGTCAAGAGCACTTGAAGTCTCTTTACACAATGATTCCAGGAGTTGTTGCCATGCATATAGAGTCATTGGAGCCAGTGCATAGAGAGTACAAAAACCTGGCTCCTATTCAAAAGGAAAAGTGAGTGGGTGTCGCAGGGCTCACAGTCGC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86WG5	Myotubularin-related protein 13 OS=Homo sapiens OX=9606 GN=SBF2 PE=1 SV=1
E9PXF8	Myotubularin-related protein 13 OS=Mus musculus OX=10090 GN=Sbf2 PE=1 SV=1
Q6NTN5	Myotubularin-related protein 13 OS=Xenopus laevis OX=8355 GN=sbf2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002855 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03456 all species →	uDENN	uDENN domain	Domain	Interproscan
PF12335 all species →	SBF2	Myotubularin protein	Family	Interproscan
PF02141 all species →	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005113 all species →	Domain	uDENN domain	Interproscan
IPR005112 all species →	Domain	dDENN domain	Interproscan
IPR001194 all species →	Domain	cDENN domain	Interproscan
IPR043153 all species →	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR022096 all species →	Domain	SBF1/SBF2 domain	Interproscan
IPR051696 all species →	Family	DENN Domain-Containing GEFs	Interproscan
IPR037516 all species →	Domain	Tripartite DENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296 all species →	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483 all species →	Biological Process	regulation of Rab protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0144.g51.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.