Gene detail

Detailed information of amic_s0145.g57.t1 in Acropora microphthalma

Genomic Location: sc0000145_pilon:636334...684793
NR annotation: XP_015752160.1, PREDICTED: protein alan shepard-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0145.g57.t1

CGATTTTGTCGAGTCACACGCAAAATTGCGTGATAAGCAATCTCTAGAAGTTACGTCACGCAATGATGTGAAATTAAGGCTTTTATAACGTTCGGAATCACCATTGTCTGAAAATCCAGACAACGTGTATTGAAGACTAAATCCCTTAAATTAACTGCTACAAAACAGGAGGTTTCAAGAATTGCTTCTAAAGGGGGTTACTAACGATGCGATTTGTAAGTGGAATGCTCCAAGTGTCCGAACGCCATGAAGTGAAAAGATAGAGTGAACTTGGTGAAGTCATCTTTTACCATGCAACAGTGCCTATTGAGTTTGGATGACCTGAGCACTCGTGGCATAATTCAGTTTTGCCGAATTGCCACCTTATTAGAAAAAAGCATGCATCAACCTCAGTGTCAGCGGTCCCCAGAATCCAGAAACGATTTGCCTGGCGGATAGGAGCCGACAATAAAAAAAACATGATGTGGATGGTACATGGTTTAATAGCTCCTGGAAAACCATCAGTTGTAGTGAATGACATGAACGCTTATCAACTGTGTCTCTATGTAACAGCAGGATATGAAAAGCAGTATGTAAAATTACGGAACAAGTAAAGCGCCGTTAAAGGTGGAAAGACTTGTATCTTGGCAATCAGCAGTGGATCTAAACGTTCGTAATGAATGTGACCAATAATCTCCCTTTGAGGAAGATATGTCAACAAGAAGAAGTGCTTTGGAACAGCAGACTGCCTGGTATCGCAGAGATTCTACGCTAGGTAGACCAAGCTATAAGATTAGGGGGGCGACTGGTATGAAGAGGTCTCCGATCATTTGTAGGACTGCTGGCGTATAATGAGCGATTCATTAGCTCAGGTTCTAGAGACAGAGACGATGACTACGGATCGGACAAGCAACCAGGAACGCACGCACGGGTCCAAGGACACTGAATCTAACAGCTCACATGCTACGCACGATCCAGCTACGCCGCCAGATCACGCAAACACAGAGATACCAAGTAAAGCGCTTGAAGAAACGGAAACGCAATCAGTGGACGCCGAAAATCGCAACAAAAACGGACAGGAAAGAGATGACAAGAAGGTTTCAATGAGGCAGCAACTGCAAGGAAGTAGGAAGAAACAGCCTTCAAACCTGACAAAAACGCAACAACAACATCAGCAGAAACCTCACCAAGGTGGACGTCCACCTAGAGCAAGCCCCGCAGGAACATGGCCATACCAGTCATGGACACCTGTAGGATACACTCCTCAACGCTTCACAGCTCCAATTTTTAACTTCCCACACCCAGGGGCGTACACCATACCAAGTAGTCCTTCAAGCTCATCTCAAAGACGCTTATCTGCAAGTGACAGCCATGATGAACCTGAAGAGAAACTTAGCAAAACAAACCTTTACATTAGAGGTCTTTCACCCGGAACAACTGATGATGATTTAAGTAATTTATGTAGCAGATATGGAAGTATTATTTCAACTAAAGCTATACTAGATAAGAATACTAATAAATGTAAAGGATATGGATTTGTGGATTTTGAGTCCCCAGCTGTAGCACAGAAAGCAGTAACAGCTTTGAAAAACAAAGGAATACAAGCTCAGATGGCAAAGCAACAAGAGCAAGATCCTACAAATCTATATTTCCTTTATCTTCCAAGTAATTTTGATGAAGCAAAATTAGAAGCAATGTTGAGAAGATATGGCAAGGTGATATCAACAAGAATTCTTAGAGATACAGACCACGAGAGCAGAGGAGTGGGATTTGCCAGGATGGAAAATACACAAATTTGTGAACAAATAATTAAAGACTTTAATGGTAAAAAGATTCCAGGTAGTATTGAATCACTAGTTGTAAAATTTGCTGATGGAGGTCCAAAGAAAAGACAACAGACACAACAAAACCATGATAGTTCTTGGCCACTTAACAGACCGGAGGGAGTGCATGTGTTGGGGTATGAACCACTTGTTATGCAGAATGGTAAACACCTCAGCAAGAGTGACACATGCCACAGTTCTTCCAGGGCAAGGAGCAACACTTGTGCAGACAAACATACCATTAGCATACCAGCTTGCTGCTGCTGGTGGTGGCAGCTGGTTACCTCAACCATACATTCAGATGCCGCATCAACTACAACCGAGTCAACTTGCACCAACGCCAACTGCAACAGCAACTGCAGTGACACCCTCATCAATCCAAGAACACAATGTTGCACCAATGCAACAGAGCTCTGTGCAACACTTAGCAAATCAGATGAGCCAGTTGCAAATGTCTGGCTCACAGTACATCACCAGTCCAGTACACAGTCCATTGCAAGGCTCATGGCAAATGATGCACCAGCATGGACAACCACATCCTCACTACATGTCACTTGAGGATCATTCAATGGTGGGTGAGGGTGACCCCCTTGGTCAACCTCCCATGTCACCACAAGCAGGAGGTATTCCGCAACATCTTTCTGATCATGCTCAATCAATGGAAGACCACAGGATGGGAAGCTATGCATCTCCTTATCAAAGAAAATGAAGATAACATAAGAAAAAGGACAACAGCAAATTATTTAAATTTGAAGAGATGAAATTGTTTCCGATGATGATGAAGATTGAAAACAGAGAAAGCGACATGAGGAAATGGCTTCAAGTCGTATTGGGACTGCAATGGCTTCAACACGGGTGTTAATTTAATTAAGTGAATTCAGCTCATGTGTTTGTTGTTTCTTTTCGCTCAAAAGGAAAGGTACGAAGATGTGTATTTCTGGGGTTTTCTGTAAGATTTCAATCGGTCTTAAAAGACGTTGTTGAAAACAACAATGTTCAGATGAAGAAACGACGCCAATACGACGTGTGAATTTGATGACAAGAAATTTCAAAGATTGAGCATCCTATTTGAACGGTGGATGAAAAGTCTTAAATGAGAACCAATGATCAAGATGAAATATTGGAAATTACAAACAATTTAAATGGGAAGCAGTTTGGCAAGTTGAGTCGTAGGTTTGATCGAGACTTGTTTTATTACCAACATTCCTACAAAGCGAAATGGAAAGTTTTAAAAGAAGGCGAATACTCAACTCTAGCTTGCGGAGCCAGTTTCTCGTAAGTTGGTGTTGCCGTTGTGATCAGGGCCGAGTTTTTCGACTGTTAGGTTGCAAGCCAAAACCTATTGGTTTTCATAGTGTTAAACCCAGCCAGAGACTGACTCGGCCTTGACTAACTCAACCCAGACGTATCAAAAGAGACTGTTCATGTTTGCATAACTGCACTGTGATCTGGAAATGAGAAATAGCTGGCAACGGTATGATAGTTATCCGAGTCATTTACAAGGAAAAGTGAAAATGCCCTTCATTGCACATTACTTCTTATGATAGCCCGGTTTCGATTTCAAGATATGGATCGATATACCACACTATATCGGTATAGTATCTCGATTTTAACGTGTGAATGAATCAGGGGAACAGTGTTGATGGATGTGTGCTTTTGCTAAATCGATAGTTTCTGTCCCCTTATTGAATTGTATTTGTGATTTCAGTGGCCTGACTTCGACCGAATAATTTCTGTATAATTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4MM23	Protein alan shepard OS=Drosophila willistoni OX=7260 GN=shep PE=3 SV=2
B4QRJ0	Protein alan shepard OS=Drosophila simulans OX=7240 GN=shep PE=3 SV=1
B4HUE4	Protein alan shepard OS=Drosophila sechellia OX=7238 GN=shep PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002156 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR002343 all species →	Family	Paraneoplastic encephalomyelitis antigen	Interproscan

PANTHER

No PANTHER signature was detected for amic_s0145.g57.t1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0145.g57.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.