Gene detail

Detailed information of amic_s0146.g16.t1 in Acropora microphthalma

Genomic Location: sc0000146_pilon:243432...257495
NR annotation: XP_029206592.2, protein Wnt-1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0146.g16.t1

TCATAGATTGAACAGCTCCGGTATTTCAAGGAAGAGTCAAATAGGAAATGTCGAGTTAAAGTGAGTGGCCTCAAAGCAGTGCAAGCGCTAAACAGGACAGAAGTTCTCAGGATTCAAGCATTAGCAGAGCTTCGCACAAAGGGAACACAAGGCTTACTCGACATTGATTCATCTCAATCCACACGAACCATCCTTGTTTCTGCAATCCAAGCATGACCTCTCTAGCTGCAATTTTGGTGCTTGCTTCATTTGCTCTGATAAACAACTTGGGAATAATGGCTCAAATCAAGAATGACCAAATTGTGGCACAAGAGGCTTATCAATTATTATCGAACATCATAAGGGAAGGAGGCCATCTTGGGCTGGAAGAATGCCGTAAACAATTCAAGAATGAAATATGGAATTGTTCCCTTAACCACAAACATATCCATAAACAGCTTCCAATCTTCGTGAAAACAACGCTTCCGTATGCTAATCGAGAAACGGCGTTTGTGCACGCAATTAGCACGGCCGCCATAACACACAAAATCACGACACAATGCAAGCAAGGAAAGATACCTGGATGTAATTGCGCGGTCATCAAGAAGTCGCATAAACCTGGAGATGATTGGCAGTGGGGTGGATGCAGCGACAACATTAGGTTTGGAGAAAAGGTGACCAAGCGCTTTATTGATAGTCTGGAAAAAGGAAACGATGCCAGAGTGGCCTTCAATTTACACAACAACGAAGTTGGAAGAAAGGTTGTACGATCCAGCACAAAGAGAGAGTGCAAATGTCATGGTGTGACAGGAAGTTGCAGCTTGAAAACTTGTTGGAAGGAGCTGGGGCCTATGGAAACTGTTGGATCCAGACTGAAACAGATATATCACAGTGCAGCGCGGGTGTTATTTGAGAACAACAAACTTAAGGAACGCATAAACAGGCAACTAAGAGTCGTCTCGAGCAAAGAAAAAAAGCTTGTCTATCTCGATGTCTCTCCTAACTACTGCTTGCGCAACGATACTTTTGGTTTGCCTGGGATGCGAGGAAGAACCTGCCGAGGTGACGAAGCTCCTCTGAGCAAATGCCGATCCCTTTGCGAAAGGTGTGGACTTCAACACCACACAGTGGAAAAATACAAACAGATCAAATGCAAGTGTAAATTTGTGTGGTGTTGCAGTGTTAAATGCGAAACATGCACAAGCAAGTACTCTCTCACAACATGCGCTAGGTAGGCGTAAAGTGCAACGAGGACAAACACTGGACCAAACGTTTATCAACACCTGCATTTTATGTTGTACAGTAAGGAGAATATGGTCAACGAGTGGCAGAATTGTTGTTATTTTTTTCTTTCTTTCCTATTTAATGTTCGTATCTTCCCGCCAAATCCTTGGCGTAAAACATCGCTTTCCGACAAAACCACATGACTTTAGTGATGCGCAATGCTTAATCACTATTGGCTAAGAAATTATCCCATCTAGTAACAATAAATGATGTTGCAAATAACATCGTGTTATGTCCTCTAGTTGTTACATGCTGCCCACGGCCTCAATaatagggtgcttaagcaaacatggcgtcgacgacaacgagaacgtcatctcaaaatgcaacttcgcgtttctgcaatcctttcgcaattattcaaagtcattaggcttgcaaaatgtattcttaccatcccggaattgaattgggaccagcgcttctgaaataagacaaaattgaacatttttcatcatatatactcacgtcgtccacataattgcaaaacaggtcatttcacggcgtggaaagaactagaacaacggtctgcggaatgtctataagtgaaaaatgcacgtactaagcgtgcaaagcgtgcaaaactattattcttgttgccgttgtcgtcgtagttgcttAAGTATCTTAATGGCAGTCCAGGGCGGAGCCCCTTACTTAAAAACATCTTTCCATTCCGGGATTCAAATGAAGACTGGAAAGCACGTTTAAGCTAACCAAAATTTGGAAGCCGTTAAAGGATGGTCACATGCATTGTAGCTTGGTTGCTCAATTTGATTATGATCGTTATAATGAAGGATTCTGTGATGATTTGAAGAATGCCATCTATATGGTATAATCTGCCAGCACTTGGTCATTAACGCGAAAATTGCAAGGGGAGCTTTCAAGAGGTCGGGAAAACAACTGAAAACCTATCGATATCTAAATATGACAACGTATCGCCTAAAATTAAATATTTATTATATGCTGTTTTTCGAAGAGTTAACTATCAGATAAAATAACAGAGTTGACCGAAACCGTCTCTATTACATTAGCTTTTATTACCGTCTTTGAACTCCTCCTATAAGATTGGCTTATTTAATCTTCTTAGCCTGTTTATCATTGGCTTGACGACACTCGACTAAAAGCAGCTCTTGCTGAGGCGGTACTGACCTCACAAAGAAACTAAATGAAAGAAGTGTTATGTTTTATTTAAGATGCAAGAGTCTTTAGCTGCTATGATGTTTATAATGTATATACTTGTAGTTGTAGTGACGGTGAACCTTCTTTCTGGAGGTCGATTACTTTCAATTAGATTAAAAATAATAAAGCCGGGGAGCTTAGATACAAAACTTGTCAAGTATTGGGATATGATACACTAGTTGCAATGAAATACAAAATAAAGATTTTGTTCGCTATTATGGATATCCATTCCTCTCCTTTACTGAGCGGTCTTCAATTGAACGAGAAATGGCAAAAGTTGTGGATGCCCTATGTAGTTTGCTTTGGAGTATTATTTGGATGATTATTCTTTTCATTATTGCCCTTCCAGTGGGGTTCATTGGCGCTATTCTTTACGTCATCATATCCCCATTTAACGCATGCTGTGGTTGCACCAAGAGTCTAACAGATTTCTTAAAGAAAGGAATTGAGTTTCCCTACGACTCTGCAATGAACATGGTTAACGGAAAGCGAGGCTGTTAGCCTAGTGTCCTTTTCAACGAAAGAATAACGCGAAATCGTTTCGCTAAAACATTTTAACGCGTAAAACTTTTGCAAATTGTCTGCAAAAAGTATGAGGGACTCATAATAAATAAACACAAGGAAAAAAGCACAACCAGCAAAAGATGTTGACACCCTACGCATTCGTTCATAGTATGTTTTATGCCGAGAACGAATTTATGTAAAACCATGCCATTGAAATGCTCTCGCAAAATTAGTTCAGTATTAACACCGCTGCATAAACCACGAACAATTAAATGAGAACAAGTGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92050	Protein Wnt-5b OS=Danio rerio OX=7955 GN=wnt5b PE=2 SV=1
Q5NVK2	Protein Wnt-5b OS=Pongo abelii OX=9601 GN=WNT5B PE=2 SV=1
Q9H1J7	Protein Wnt-5b OS=Homo sapiens OX=9606 GN=WNT5B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000885 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00110 all species →	wnt	wnt family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043158 all species →	Homologous_superfamily	Wnt, C-terminal domain	Interproscan
IPR005817 all species →	Family	Wnt	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12027 all species →	WNT RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005102 all species →	Molecular Function	signaling receptor binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0016055 all species →	Biological Process	Wnt signaling pathway	Interproscan
GO:0005109 all species →	Molecular Function	frizzled binding	Interproscan
GO:0005125 all species →	Molecular Function	cytokine activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0030182 all species →	Biological Process	neuron differentiation	Interproscan
GO:0045165 all species →	Biological Process	cell fate commitment	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0146.g16.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.