Gene detail

Detailed information of amic_s0146.g22.t1 in Acropora microphthalma

Genomic Location: sc0000146_pilon:326387...332275
NR annotation: XP_015762741.1, PREDICTED: hemicentin-1-like isoform X1 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0146.g22.t1

ATGTTTTACTACCAAGTACTTGGAATACTTTTAAGTGTGTCTTTAAGAATGCACCAGAGTGAATCCTCTTGCAAGATTGATCCTGTAGAAACGAGGCTCGGTCCGTCCTCATCGGATGTAACCCTGGGACGTCTAAAGTGTTCGTCAACGGTCGGCGTCAATTTTGCTTCTTCTTCCTGGATACGAAATGGAACAGCAATTGAGAGGAAGTACATTCAGGAAAACAAAGAAAAGATCTGGACTGCAGTTTCATTTGTCAATTTTAGTACTGCAGAAGATGGCGAAACATTCGAATGCCAAATATCGTATCCCAATAACGGTGGGACTTCTAAATGTCACGTTACTCTAGGTAAGCCGCGGCTGAAGAAGCTAGAACCGAAAATCTTCGATGAAGGGAATGACCCGGTCAGTAACATTCAGTGGAATTGTGTCATAGAAAGTGGATGGCCAATTGCTAATCTGTCCTGGTGGAAAGATGGTTCAGAGATTTCGAATGGGGACTTCGGTGAAACACGCTATATATGGTACTCAAAGGATAAGAAGGTGTTGACCCTATCTATACTGCGTCTGAATGGCCAGCATCATGGTAAATACACTTGTAGAGCAGAAAATGTGTTTGGCACCTCTACAGAAAACACGAGACTGCTGATTAATAGACATGGAATGATCCGATTTCGACCTGATTTGAAAACGATTGAAATCCTTGAAGGACAAAACATCACTTTGGAATGCATATGCTCCGCTAAGGAGTGCCTTGAACAGCCAGCCAGTTCAGCGTACTGGAGATTTAACGACCGTGATATTTCTCCAATTGAAAGGCTCACATTTTTGCACAAGGTTATCGGAGGTCATGTTATCATCTCCCTGATCATACGAAACGTCTCGCAGCTCGATGATGGATCGTATTTGTGTGGTATTAATACTTCCAAAGGATTTGATGAAGCTTCAAAACGCTTGCATGTCGTGACGAGAGATATGTTTCCTCGAGTCTGGGCAGAAAGGAAAGAGGTGTCTGCGCATCTTTACTCACCAGCATTTTTCATATGCTCGGTCATATATCCTTCGGTTCTCAAACGTGCACCAAATCCGTTCTGGACCAAAGATAACAAGAGCTCTCTTGATCCACAGCATTATAAACAAGCTAATTCTCCAAGTAAGGAAGGTCCCGACTCGACCAGAATTCTTGATTTTCATCTGATCATTTCTAACGTCACCCTCAAGGACTACGGCGGGTATTCCTGCGGCGCGACGATCAACATTGGTCGGTCTGTGATACACCTTTTCCAGAATTTAACAATAATAATGAAGCAAATCAAAGTCTCTGGCGGCGTTACAGATAAAAAAGATTCGCTTGGTACCAACGAAAATTCGCCGGACACTCTATCCTTAATCGCCGCTGGCTCTGCCGCAGTTGGTTTTGCTATGGGCGTTATTTTTGTCGCGTACAAAATGTGTCAAAGCAGGGGCTACACTTGGAAATCATTCTTTGATGTTCCGGTGGATAGCCTGAGTTGCCAATTTCAATATGATGTATTCATTACCTTCTGTAGCCAAGACTCAAACTGGGTGAAAAAGGAACTCATCCCTCTGGTGGAGAAACACAATCTCAATTACTGCATATATGATAGAGACTTCGAAGTTGGTAAGCCTGTGGTTGACAACGCCGCGCACAGTGTGTACACCAGTCGCAAAGTCCTGGCCGTTATGTCCCACAATTACATGTCGAGTGAGTTTTGCCGCGGAGAACTGGAAATGGCTTTATACCGCTGTGCGAAGATGGGTGACCCGTGTGTAATTGTGATACGAATCGACAGCATTGACCTGAGAAAAATGCCCAAAGCTTTGAGAAATCGCACCTTCCTGGATTATTACGACTTAATTGAGAGAAAAACCTGGAAAGAACGGTTAATAAAATATCTTAAGCCTCCACCTTTTGTCGAGACCGTGATATCATCCCAAAAAATTCACGGTTTTACTGAAAACAACTTCCAAAACTACGCATCTGTTTAA

Transcript

amic_s0146.g22.t1

TGTAAATCGTTCCATTTGTGATGTTGGTGATAACTCTTCCCGTTTAAAGAATCCCGATCCAAGTCAAATGTCAGCGGAAATGATATCGACAACGGTGCAggagcaatagcagaatatccgtccactattttattcttgaagcggcatcctttgaagaacgaggcatattatatgcaaattagtgaacgggtattctgtaatctaTCCCAGATGCCCATCGGTTGTCACGAAAGTGTCATAAAAGAAACAAAGGAAATGTCAGTTTTGCTCCACATTGAACTTCCCTGTCGACAGTAATTGTATGTTCTAAAAGAATCATCTCTGAAACAACAGCGGAAAACGTTTCTCCCATTTCAACAATAACTATTGCATGAAAACAAATTTGAAGCTCAACTTCCTGTGAGTTATCCTTAAAACGCTGCCTCACGGGGATATTTTCATCAAACTGGTGCTGACTGCTAAAAATGTTTTACTACCAAGTACTTGGAATACTTTTAAGTGTGTCTTTAAGAATGCACCAGAGTGAATCCTCTTGCAAGATTGATCCTGTAGAAACGAGGCTCGGTCCGTCCTCATCGGATGTAACCCTGGGACGTCTAAAGTGTTCGTCAACGGTCGGCGTCAATTTTGCTTCTTCTTCCTGGATACGAAATGGAACAGCAATTGAGAGGAAGTACATTCAGGAAAACAAAGAAAAGATCTGGACTGCAGTTTCATTTGTCAATTTTAGTACTGCAGAAGATGGCGAAACATTCGAATGCCAAATATCGTATCCCAATAACGGTGGGACTTCTAAATGTCACGTTACTCTAGGTAAGCCGCGGCTGAAGAAGCTAGAACCGAAAATCTTCGATGAAGGGAATGACCCGGTCAGTAACATTCAGTGGAATTGTGTCATAGAAAGTGGATGGCCAATTGCTAATCTGTCCTGGTGGAAAGATGGTTCAGAGATTTCGAATGGGGACTTCGGTGAAACACGCTATATATGGTACTCAAAGGATAAGAAGGTGTTGACCCTATCTATACTGCGTCTGAATGGCCAGCATCATGGTAAATACACTTGTAGAGCAGAAAATGTGTTTGGCACCTCTACAGAAAACACGAGACTGCTGATTAATAGACATGGAATGATCCGATTTCGACCTGATTTGAAAACGATTGAAATCCTTGAAGGACAAAACATCACTTTGGAATGCATATGCTCCGCTAAGGAGTGCCTTGAACAGCCAGCCAGTTCAGCGTACTGGAGATTTAACGACCGTGATATTTCTCCAATTGAAAGGCTCACATTTTTGCACAAGGTTATCGGAGGTCATGTTATCATCTCCCTGATCATACGAAACGTCTCGCAGCTCGATGATGGATCGTATTTGTGTGGTATTAATACTTCCAAAGGATTTGATGAAGCTTCAAAACGCTTGCATGTCGTGACGAGAGATATGTTTCCTCGAGTCTGGGCAGAAAGGAAAGAGGTGTCTGCGCATCTTTACTCACCAGCATTTTTCATATGCTCGGTCATATATCCTTCGGTTCTCAAACGTGCACCAAATCCGTTCTGGACCAAAGATAACAAGAGCTCTCTTGATCCACAGCATTATAAACAAGCTAATTCTCCAAGTAAGGAAGGTCCCGACTCGACCAGAATTCTTGATTTTCATCTGATCATTTCTAACGTCACCCTCAAGGACTACGGCGGGTATTCCTGCGGCGCGACGATCAACATTGGTCGGTCTGTGATACACCTTTTCCAGAATTTAACAATAATAATGAAGCAAATCAAAGTCTCTGGCGGCGTTACAGATAAAAAAGATTCGCTTGGTACCAACGAAAATTCGCCGGACACTCTATCCTTAATCGCCGCTGGCTCTGCCGCAGTTGGTTTTGCTATGGGCGTTATTTTTGTCGCGTACAAAATGTGTCAAAGCAGGGGCTACACTTGGAAATCATTCTTTGATGTTCCGGTGGATAGCCTGAGTTGCCAATTTCAATATGATGTATTCATTACCTTCTGTAGCCAAGACTCAAACTGGGTGAAAAAGGAACTCATCCCTCTGGTGGAGAAACACAATCTCAATTACTGCATATATGATAGAGACTTCGAAGTTGGTAAGCCTGTGGTTGACAACGCCGCGCACAGTGTGTACACCAGTCGCAAAGTCCTGGCCGTTATGTCCCACAATTACATGTCGAGTGAGTTTTGCCGCGGAGAACTGGAAATGGCTTTATACCGCTGTGCGAAGATGGGTGACCCGTGTGTAATTGTGATACGAATCGACAGCATTGACCTGAGAAAAATGCCCAAAGCTTTGAGAAATCGCACCTTCCTGGATTATTACGACTTAATTGAGAGAAAAACCTGGAAAGAACGGTTAATAAAATATCTTAAGCCTCCACCTTTTGTCGAGACCGTGATATCATCCCAAAAAATTCACGGTTTTACTGAAAACAACTTCCAAAACTACGCATCTGTTTAAGAGATACCGTTCAAACCAAATATAAAAGAATTTTGTTGGTGCCGTTCAGATGAAAGCATTTCGATCCTAATTTAATCAAGACTCTCCGAGAACGTCTAATTTGCTATGCACAGCAGAAAGTAAAGGTTAGTTGTTATTCAGTGAAATAAGTCAGTGTTAGTGTTAAGGTGAGGTCGTCATTTTGCTCCCATAGAGAAATCACTTTAAGCAACGAAGACGAATAACGTAGCTTCACTTCCACGAAAGAAGTAGACATCGAAAAATGTATAACTCAACTTTTCCAATCGTTTTATTCGCATTTCATGATTTTGAATGACAATGCTTTCATGTCTTGTTTTTAAAGAATAGTGTAAACATCGACAACGATCATCAAATGTGATGTTTAGCTAAAAACATTTAAATGTCAAAATATTAATAATGTGGACCAAGTAATTAAAGTTTATCATGGtat

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2C9	Toll-like receptor 6 OS=Homo sapiens OX=9606 GN=TLR6 PE=1 SV=2
Q0ZUL9	Toll-like receptor 6 OS=Dasypus novemcinctus OX=9361 GN=TLR6 PE=2 SV=1
Q9EPQ1	Toll-like receptor 1 OS=Mus musculus OX=10090 GN=Tlr1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000113 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01582 all species →	TIR	TIR domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR015621 all species →	Family	Interleukin-1 receptor family	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11890 all species →	INTERLEUKIN-1 RECEPTOR FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0146.g22.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.