Gene detail

Detailed information of amic_s0146.g3.t1 in Acropora microphthalma

Genomic Location: sc0000146_pilon:32749...36485
NR annotation: XP_029206567.1, zinc finger protein 395-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0146.g3.t1

GGCTGAAAGCCAATCATATTTTTTGACAGAAAACATTCACGACAGGGGACAGTCGACGCCCCCAAAATTTAACCTAAAAACAACAACAAAATGCAATTTTCAATCGGTGTGTTTTTACCGGAACGTTCGCATTTAGGTACAGCGTAAATACTAAGTCTCGATTAAAAGAGGATAGGTTTCCTCAGATTTCTCTGAAATGTGTTCGCTGAGAAGAAGGCGTCCTCAAAATTCGTTACTTGGAGCTCATGTTTGCGCACCATGGAAAGACGGTTACTTCTACAATGGAGTAATTGAGGCGGTGAAGAGCAAACCTACCGGCGAAACTACTTACACAATTTTATTTGAAGATGACTACATTGCAGAGGTGGATGAGGGAGACATTGTCGGGCCTGGATTTCAAACTGTCGGCTGTACATCATTAAGGAATGGCCAACGAGTCTTCGTTTCTTTCAAAGGCCAAGAAGTCGCCGCACGCGTTCTCGAATCGCGCCCGGAACTTGACGAAGTTTTGGTTCAGGTCTCTGACGAGCAAAACTTGATTGTGGCCGTTAAATCTGAGAACATTCACTTGATTAGAGGAGAGACGTTTTCTGAGTCAACATACGAAAGAAAAACTGCAAGATCCACAATTTCGTGCAATTTATCATGCAAAGAGAAAGCACATGGAATTTCATCTTGCTACGGCTGCACTAAACGACAAGAAAATGTCTCGAGAGGCGAAGAAATGGCTGCCCTGGTGCTAACCGCTCTTTCAATTTCTCCAGTTTTCAAAGACTCGGATCAAGCTGAGGATGCGAATTCAGGTCTTCCGCTCACACCAGATTCGGGCTCCGGAATGGCTCTCTACCCGAGCCCCAGTAGCTCCCCGACTCATTGCGATTCGCCGACAAACAACAGCGATTCCAACTTTTTTATCAACGGCCCACCATCACCACTAGACGAGGGAATCACAGTTGATTTTCAGCGTCAAGAAAATACTCGAAAAAGAAAGAATTCCACCTCGTCACATTCCATGTTGAAGACATTATACAAATGTACCTGGCCTGGATGCGGGAAAACCCTTTCAACAGCACCAGGAATCATACGACATGTTCGCACGATCCACCTCGGGCCTAAGAATTCTTTGGAAGATGGATACAGTGATGGCGAGGAAGATTTCTACTTCAATGAAATTGACCCTGATGATGAATATAACGATAGCGAGCTTCCGTTTACCCTGTCACCGGCGACACCCACACAATCTCATTTTGACATGGTAAAGAGCCCATGGTCGGAACCAGGAGTTTCCGCCGTTACATCGCCAACATACGGCTCTCTGCAACATCCACGGTTCAACTGGGATGCTCATACGATTTCACAGCTCACGCATCCACAGCCTGCAAAGGGAGCAACAAAAGCCGCTTCTCCTACAAGAATTCCGAGCCATCACACTTACAGAAAACTGCGAGGCGATAGCAAGAAATGCCGCAAAGTTTACGGGATGGAGAACAGGCATTTGTGGTGCACTCAGTGCCGATGGAAAAAAGCTTGTGTGAGATTTGCTGATTAAGGAGGACAAAACTGAAAGATTTATTCGTAGCTCAAATACTTTATTTATAGCTTGTTCCATCTTTAACATGGCGTACGAGACAAACATTGGACTGTGCTGTCGTAGAATAAAATCGAAGACTTGTACATAGATTAAATATTTTATCAAATAGTTATATTTTTTATAAATCGCAATTCCTGTTGTAAGACAGAATGCGAAACAAGGAAGATTGCGTTCGTGAAGACGGGACAATGTTTGAAAGAATGATGCACAAATTTTCCCCAGACAAGTTCAGTTTGTTGGACGGTACAAGAAAGTTCCTGTATTAATACAATACTTTGGGGTGTGATTGTCATATATCACGAGATTCAGTTCAAAATGTAATGTTAAAACAGACTTTGGAAGCCCCTACGAAAATAATGTTTCCAATAAAAGTTACAGGTGGGTTTATTTAAGGCTCAAGAACTTTTAGGTTAAGTGTTGTTTTAGGCCACACCGAGACCGAAAAAAACAGCTTAATGCTCTTTATAGAGAGATTTTTCGTCAAATCTTGCGTTGCAACCCTAGATGATTTTCTGGCATGCATGGAAATCGATTGGAAATTTGTTGAGTTCGTTCCATTTCATTCGAGTATCGTATGATCACGCTAGAGTCACGCTAAAGGATCAAGCTGCTTTTTCCAGTTCGAAGCTCGCACGTGACGGTAAAAGTTCAACTCTCCCGAGCGTTATTTGCGATTGAAGAGACGTTAGAATCTCAAAAAAAGAACGAACAGAACCAGTTGAATTTGATAGGAAAGCTAATCAGAGGTTCATTCTCGGAGTTTTCCTTTACTTTGAACGGCTTTTCTTATGTTGTTTGTTTCATTTTGTTAAGACACGGCGAACTCTAATCTTTGACATGAAATCTGATTGGCTGAAATTCAAGTGAAAGACAATACGACCTGTTCAGAGAGGCGGTGAATCATATTTTGATGTTATTTTATGACATTCTATGAATATTAAATGACCTCATGGGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFC8	Zinc finger protein 395 OS=Xenopus laevis OX=8355 GN=znf395 PE=2 SV=1
Q1LY51	Zinc finger protein 704 OS=Danio rerio OX=7955 GN=znf704 PE=3 SV=2
Q6ZNC4	Zinc finger protein 704 OS=Homo sapiens OX=9606 GN=ZNF704 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005856 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15997 all species →	DUF4772	Domain of unknown function (DUF4772)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR031940 all species →	Domain	Domain of unknown function DUF4772	Interproscan
IPR052253 all species →	Family	CR1/CR2 motif-containing transcription regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13006 all species →	PAPILLOMAVIRUS REGULATORY FACTOR PRF-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0146.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.