Gene detail

Detailed information of amic_s0146.g37.t1 in Acropora microphthalma

Genomic Location: sc0000146_pilon:487472...492019
NR annotation: XP_029207163.2, YTH domain-containing family protein 3-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0146.g37.t1

TGAAGTCACGCAAAGCACGCGCAGGACACTACTGAAGGAGCGGCCATTTTCTTTTGTTCTCGAGCACTTCCTAACCTAAACGACGTGGGAGCTTCAAATCAGAAATTTAAAGTTCTAAGTGACCTAGGCATTTCTGTTTTTGTGGGTCATGTCGGCGACAATAGACCAGCGGCCCAAGGATCATGGTGGAAAAGGTTATGCGAAAAATGGCGAACTACAGAATGTGGCGAACGAAGACCTCGAGCGATACCTTCATCCGGGAACGAAGCAGGGTAATGATAAACAGTTGAATTCACAACAAACGAACACAAGCTTGCCTAGTCAGTTGACGGATACTTATTTGCCTCCGTTTTACCCAAGTACAACGACTGGATCTAATACCGGACTGCCTCCGATGCCTTTTCCTTATCTGAATGCGGCAGGAATTAGCGACGGGACTTGGTCAACGGGTGTATCCTCGTTAAATCCAAACACTCTTTTCACCTCTTCGGGTTTCAGTGCGGTTGGTAACGGCGAACAGCTTTTGCCAGATCAAATGTTTAATCACAATGCTGGAGTTGCAGTTTCCACAAACGCTTACTTAAGCAGTTTGGGGCACAGTTCCCAAGGAGCTCCGGCACTTTACTTCCCAGGGACATCTAATGACATCTCTTGGGGAGAGCAAACGCAAGCTGCTGGAGCACCATTGCTACCCAATTTTTACCAGCCGCCTCCACCTCCAACTTCTGAACATGCTGCATTAAATGCAATTGCTGTTGACATCAACGCTTTCAAAGGAGAGGAGTTTGGTACTCCAGGCAATGTGGAAAATGCTCTTTCTAGTTTAGCTCTTGGTGTGGAAGACAAAGGAAAAGAAGTAATGAGTGATAAAGGCAAGGTGACTAGTGTATCAAATGTTAATGCTATGGAGGTTAAACCAAAATCTTGGGCTGCGATTGCCAGTCAACCAGCAAAGCCTAAGCCAAAGTTGCCTCCACCAAAACCTAAACTGCCTCCTCCACCAACATCACAACAAGGTATTCCATCTTCCAAAGTGGATTCTGGGAGCTGGGGCAATGCTGTGAAATCAGGTGCTTCTAAGCCTGCTATTGGCCGCGGTACAAGGCCACGGCCCAACACTGCAGGTGGAACTGTCACTGGAAATCCTGGATTTTCAAACCCACCTGTTACTCCTTCAGAGTCAGTTCCTGTTCTTGAAAAATTGAAAGCCAAGAACTGCTACAATCCAAAGGAATTTTCTCTTGAACAGAAAAATGCTCGCTTTTTTATTATCAAAAGCTATAGTGAGGATGACATTCATCGTTCAATCAAATACAGCGTCTGGACAAGCACAGAGCATGGGAACCGGCGTTTGAATGAGGCATTTAAGGAGCAGAAAGCGCAAAGTGCGCCCACATATCTCCTATTTAGTGTCAATGGGAGTGGACACTTTTGCGGTATTGCCATGATGATGTCAGAAGTGGATCTCGACATTGAGACAGGAATTTGGTCTCAGGACAAGTGGAAAGGAAAGTTTGAGGTAAAGTGGTCCTACGTCAAGGATGTGCCTAACAATGCTCTGCGTCACATTCGATTGGAAAACAATGACAACAAACCTGTGACAAATTCCCGAGATACACAAGAAGTTCCTCCTGAAAAGGGCAAACAAGTTATGAAGATAATTCATTCGTACAAGCACCAGACTTCAATCTTTGATGACTTTGGTCATTATGAGAAACGACAGGATGAAGAATTCAAAAAGGGTGGAAAGAAAGTTGTTGGTGTCAAGGCACCATAAGCCATCAGGAATGTTCTTGTTTTTGTCATAAACTGAAACAAAGCGCAATTGCAATTAAACTTGTGGACTTCATATAATATTCATTTCAAGTTGGGTGAAGGAACCTGTAGCAAAATCATACTTGGAGGTCATTCAGCAGTGAAGAACCATTGTATAATCTTTGTATTGGGAAGAGCTATAATTTCAGCATTAAAGAAGAAACTGCATGCTCAGGGATATGAAGTATTAGAAATGCTCTGCTTTTTGATAGTTTGGTGGTGTTAATTAGGAATGATCTTCGAATTTTTATTCCCTATAATATTATAGACTCTGGTTCTAAACAATACAGTTTGCTAGTAGACTGTCTCTATACAGTGACTGCCTTTTCAAGTTTATTTGCCAAAAAGAGGTTCCATTCACAATAAACAACTACAGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYJ9	YTH domain-containing family protein 1 OS=Homo sapiens OX=9606 GN=YTHDF1 PE=1 SV=1
P59326	YTH domain-containing family protein 1 OS=Mus musculus OX=10090 GN=Ythdf1 PE=1 SV=1
Q8BYK6	YTH domain-containing family protein 3 OS=Mus musculus OX=10090 GN=Ythdf3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007877 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04146 all species →	YTH	YT521-B-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007275 all species →	Domain	YTH domain	Interproscan
IPR045168 all species →	Family	YTH domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12357 all species →	YTH YT521-B HOMOLOGY DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061157 all species →	Biological Process	mRNA destabilization	Interproscan
GO:1990247 all species →	Molecular Function	N6-methyladenosine-containing RNA reader activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20102	YTHDF; YTH domain-containing family protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.