Gene detail

Detailed information of amic_s0146.g43.t1 in Acropora microphthalma

Genomic Location: sc0000146_pilon:546650...548906
NR annotation: XP_029207177.1, E3 SUMO-protein ligase NSE2-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZXH2	E3 SUMO-protein ligase NSE2 OS=Xenopus laevis OX=8355 GN=nsmce2 PE=2 SV=1
Q96MF7	E3 SUMO-protein ligase NSE2 OS=Homo sapiens OX=9606 GN=NSMCE2 PE=1 SV=2
Q32KY9	E3 SUMO-protein ligase NSE2 OS=Bos taurus OX=9913 GN=NSMCE2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002576 (this species only)
Transcription factor family	zf-MIZ · all TF in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11789 all species →	zf-Nse	Zinc-finger of the MIZ type in Nse subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026846 all species →	Family	E3 SUMO-protein ligase Nse2 (Mms21)	Interproscan
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21330 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0019789 all species →	Molecular Function	SUMO transferase activity	Interproscan
GO:0030915 all species →	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22756	NSMCE2, NSE2; E3 SUMO-protein ligase NSE2	EC:2.3.2.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.