Gene detail

Detailed information of amic_s0146.g49.t1 in Acropora microphthalma

Genomic Location: sc0000146_pilon:586590...592489
NR annotation: XP_015762680.1, PREDICTED: frizzled-5-like isoform X1 [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0146.g49.t1

AACGAACGTAAAAAACACTTCAGGAGCAAACAGTGATTCAACAGCTTCCGATAAAGCAACGAAGGGCAGTATCTCGAGCAACCCTGGCATCACAGGAGGCGAGCAAAACTCCGTCCGCAGCCGGACGGAGATTAAGGATTACTGTTGTTATTTTGTTAGCATTGTCTTTTATTATGTTGATTACTGGAGTGGCCGTTTTAACGCAGAAAAAAGTCACAGACTTAAAAGATAGTGATTCAAAGACAGAGGAAAAGCCTGGCCCGACTTTCAATCTGGTAAAACGAGAAATCAACCCCGGGCAGAGGAGTAAAGGAAAGAGAAAGTTATCTCGACGGGAAGGCAAATGTGGGACAATATCAATTCCATTCTGCCAAAATATGTCCTATACCACGGCGCAGTTTCCAAACCATTTGAACCAGAATCAAGAAGATGCGAAGGCCTGGATAGACGCTAATGATTTAACAAAGCTCGTACAGAGCGGTTGCTCTCCTGATATAGGACCCTTACTATGCTCCTTTTTAGCACCGCCCTGTAATCGACCAGGGAGGCTTGTAAAACCTTGCAAGCAGCTCTGCAAACGTGCCACCAAGGCATGCAAAGCTGTAATAAGACGGTTAAGAATCAACTTACACCCAGTCATGGCTTGCCGGCAACTGCCAAAAGATAGAACCCAAAAGTGCTTTGATGGATCATGGAAAAGAGACACGTCAGATTGTCAGCAAGTGCCGTTGAAGCAGTGTGCTAAGTACATCAAGAGAACATCTTCATGGCAAGCACAATTTCCTAATTACTTTGGCCACACGAAGGAGGAAGCCATAGCGAACCTAAAGCTATTTGATCCAATATGGCCGTACGCTGAGTCGGAACAGTCGGATTGCGCATCTACCTTAGCACATTTCCTTTGTAACATGTACGCTCCCCAATGTACTAAGTCCAACTCTCGCATACCACCATGCAAAGAACTGTGTTTGAGCGCCAGATCAAAGTGCAGATCCTCTTTTAAACAAGTCAGGAAAGACAGTGGTTTTACATGGCCCAAAGATATTGCGTGCAAGAACTTTCCACCGAGTGGTACGGCTCCTTGCTACATGACAACAACCCCAACAACATCGACAGGACAAGAAGTTGCACCAGTTACCAATGCCGCACCTTCATCTGGGAAATGTCAAAGGATTACCATTCCACTCTGTAAAACGGACCTTCCATACAAGACGGCAATTTTTCCAAATCTTTTCAATCAATCGAGACAAAGAGATGCTGCCATAGAAGTGAATCAATTCTCTCCACTTGTAATGGCTAACTGTGCCTCTGACTTGCCCCTTTTTCTTTGCTCCCTTTACGCGCCACCTTGTATGCGTCACAAAGAAAAGGTTCCTCCTTGCAGAAGCCTTTGCTCCCGAGTAAGGATTGGCTGTGAATCTCTGATGAACCGATTTGGTTTTAGTTGGCCCAAGATGATGGCATGCGAACGGTTCCCCGAAGCTTCTCCAAACACGCTTTGCTTGGACAAGCCCAACATGAAAACTCGTCAACCGTCGCTAACAGCTACAATTAGAAAGGAAGAGAGATGCGAGGCCATGACTATTCCACTCTGCCGCTCAAACGATGTTCCCTTCAAATACAACATGACACGGATTCCCAATTTCTTCAAACATTTTTCACAAAGTGAGGCAGCCCAACAAGTATCTCAGTTCCTTCCACTTGTGAAAGTCGATTGTTCACCAGATTTGTCCCTGTTTCTATGTTCTCTTTACTCGCCTCCTTGCATTGGACCACAGAAACCTTGTCGAGAGCTTTGCAACCGTGTAAAGACTGGCTGCGCTAGTATTTTGGAGGAATTCGGTATTCCCTGGCCCGAGGTCTTGGCATGTGAAAAGTTCCCTTTGAGCAGTGGTGACGAGCTTTGCTTTCAGCCGACGAAAGTAGCTGCAACTACAGCTCAAACACCGGCAACCACAACTCAAATACTTACTCTCACAAATGAGTTAAAAGGGCCAACCAGAACAGAACCATTTACCGGAGATAAATGCGAGGACCTGACCATTTCACATTGCCATGTTTTGCCCTATAACAAGACATCATTTCCAAACCACTTGAAACATCATTCACAAGAAGAAGCAGAACTTGAGGTTAACTCATTCGCTCCACTTGTGAACGTTAATTGTTCACAGGAATTTCAATCATTTGTGTGTTTTCTATACGCCCCACCCTGCGATGGCCCACGCTTACCATGCAAGGAGCTTTGTTACCGAGTTAGAGAGGCCTGCCTTTCTCTTATGCAAGGCTTTGGTTTCGGATGGCCAGATGAGATTGACTGCGATAGATTCCCTTCATCTGGGAACGGAACTAAATGCATGGATACACGTGCTGTTAGTCAGTCCACAACTGTAGCCCCAACTATGACTGATGAACAATGAGTTTGCACCATTACTAACTGTCTCTGGTCGCCCAGTACATAAACCAAAAATATTTTAGGGTAAAATCTCACATCAACTATTTTCAGGATTTGAAGGGCTGTTATTAATTCATCATGATATAAGTGCATATCCAAATGTCGCATGTGTATTGTAACCCTTTTTTTGCTCATTCAATGTCAATTATAAAAATCACTTTTGAAGTTGCAGCTTAAGTCATATTTTATGTTTTACGCGACACCGCAATTGTTTTTCACCTCTTTTGTGAGTTAATAAAGTTACAATGACGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I9M5	Frizzled-1 OS=Xenopus laevis OX=8355 GN=fzd1 PE=1 SV=1
A0A0K3AWM6	Protein mom-5 OS=Caenorhabditis elegans OX=6239 GN=mom-5 PE=1 SV=1
Q8AVJ9	Frizzled-7-B OS=Xenopus laevis OX=8355 GN=fzd7-b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000345 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567 all species →	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0146.g49.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.