Gene detail

Detailed information of amic_s0148.g78.t2 in Acropora microphthalma

Genomic Location: sc0000148_pilon:1327539...1344332
NR annotation: XP_044184587.1, LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX40 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0148.g78.t2

atgtcacgaaagattgggaatgcacagtctcgcgcctcattttttcgtcattatgccgtgagtcttccagctgtcctgttgcgtgagttcccTAATGTCTTCTTCCAACCGAACAGAAGAAAAAGCTGTTTCCAGGGAAACAGACGCTCAATTTTGTTTGCGACAGATTGCGTGGAATACATGCCGGCTTTACTTATGTCAACTTGCAAGATGGCGGACAGATCGAAATCTCGCCGTTCAACGTTTCCAAACATCGACAAATTTGAATTGCCAATTAGAGATTACAGGAGAAAGTTAGTAAGGGCAGTGGAAGAAAATGATTTTCTGGTTGTCGTTGGTGAGACAGGAAGCGGAAAGACAACTCAACTTCCACAATACCTTTACAAAGCCGGCTTCACCTCACATGATAAAATGATTGGTGTAACACAGCCAAGACGTATCGCTGCTATCTCAGTTGCCACACGAGTCTCCGAAGAAATGAAATGCCATTTAGGAGCAACCGTGGGTTATCAGGTAAGGTTTGATTACTGCACCAGTGATGAAACTGCAATCAAGTACATGACTGATGGCTGCCTTTTGAGAGAGTTTCTTGCTGATCCTGCACTTAGCAAGTACAGTGCCATTATCCTAGATGAAGCTCATGAAAGAAGTTTGGACACTGACATACTGTTTGGTTTGGTAAGAAAACTGTTTCACAAACAATCCAAAAATGAATCACGCAGCCACGACAATCAGATACCAAAGATTATCATCATGTCAGCCACCCTGAATCATGAAAAGTTTTCTGAATTCTTCAGTGGATGTCCAGTCCTTGAAATTCCTGGTCGCTGTTTTCCAGTCAAAAATATTTTTTTGGATTATGTTGGAGTTAAAGACTTACAAACCCCCAGTTATCTCAAGCGAGCAGTGGAGACAGTAATGAGAATCCATCTTGAGGAGCCGCCAGGAGATATCTTAGTGTTTTTGACTGGCCAGGAGGAAATTGAGCATGCATGTGACAGGCTGTTTGAGGCAGCTGAGAATGTTGATTATTCACATGACATCTATTACAATGAAGTCGAGGCCATGATGATTCTTCCTCTGTATGGATCCATGGTAACAGAATTGCAGAAAAGAGTCTTTGATCCTCCCAGATCATCTGTAAGAAAAGTTGTGGTAGCAACAAACATTGCTGCCACATCACTCACCATTGAAGGGATAAGGTATGTTGTGGACAGTGGCTTTGTGAAACAGTTATCTTACAACCCGCGCACAAGATTGGATTCTCTCAATGTTGTACTGATATCAAGGTCAGAAGCAATTCAAAGAGCTGGAAGGGCTGGGAGGACAGCACCTGGGAAGTGCTTAAGACTTTATTCAAATGATGTGTATGAGACAGCAATGACAGAGGAAACAAATGAATTTATTAACGTACGAAACTCCATTTTATCGTTTCGTAGGTTTCAGTACATCGATCCACCAGAGGAAAGAATGATTTTAGAAGCATTGAAACAACTCTATTTCTTTGGTGCATTAGACAGTGGTGGAAATGTAACTGCTCTTGGTCGCAAAATGACCGACTTCCCCCTTTCTCCAGGACTCTCCAGAACGGTCATTCTCTCGGCTAGCCTTGGCTGCGAGGATCTCGTACTCCCAGTAGCTGCCATGTTGTCGGTAGAAAATGTCTTTGTGAGCCCAGGTGGAAAAAAGAACTTATCATTAGCGACGCAGATTCGCAAAGAGCTCGCCGAAGAAGCGGGTGGAACGAATGACTTTGCAACACTCCTGTATATCTACAAGCAGTGTCACTCAAGCTCATCACCTCCACGCTGGTGCCGCGAACATTTTATTCACTGGAGGGCGTTGAAGATGGCCCACAATGTCCACAAACAGTTACAGGAAGTTCTACAGCGACAGGTCGATAGACAATCGCTTCAAAAGGAATTTTTAGAAAACACCAAGAAAAACTCGAAGGAATTGTTTAGAAGAGCTCTTTGCAACGGATATTTCTGTAACGTTGCGAGAAAGTGA

Transcript

amic_s0148.g78.t2

ccaaaccttttagctattaattttattggccggtgtagctctttgcccttgcacagcaggacggctggaacactcaggacggcagaatgacgaaaagatgtcacgaaagattgggaatgcacagtctcgcgcctcattttttcgtcattatgccgtgagtcttccagctgtcctgttgcgtgagttcccTAATGTCTTCTTCCAACCGAACAGAAGAAAAAGCTGTTTCCAGGGAAACAGACGCTCAATTTTGTTTGCGACAGATTGCGTGGAATACATGCCGGCTTTACTTATGTCAACTTGCAAGATGGCGGACAGATCGAAATCTCGCCGTTCAACGTTTCCAAACATCGACAAATTTGAATTGCCAATTAGAGATTACAGGAGAAAGTTAGTAAGGGCAGTGGAAGAAAATGATTTTCTGGTTGTCGTTGGTGAGACAGGAAGCGGAAAGACAACTCAACTTCCACAATACCTTTACAAAGCCGGCTTCACCTCACATGATAAAATGATTGGTGTAACACAGCCAAGACGTATCGCTGCTATCTCAGTTGCCACACGAGTCTCCGAAGAAATGAAATGCCATTTAGGAGCAACCGTGGGTTATCAGGTAAGGTTTGATTACTGCACCAGTGATGAAACTGCAATCAAGTACATGACTGATGGCTGCCTTTTGAGAGAGTTTCTTGCTGATCCTGCACTTAGCAAGTACAGTGCCATTATCCTAGATGAAGCTCATGAAAGAAGTTTGGACACTGACATACTGTTTGGTTTGGTAAGAAAACTGTTTCACAAACAATCCAAAAATGAATCACGCAGCCACGACAATCAGATACCAAAGATTATCATCATGTCAGCCACCCTGAATCATGAAAAGTTTTCTGAATTCTTCAGTGGATGTCCAGTCCTTGAAATTCCTGGTCGCTGTTTTCCAGTCAAAAATATTTTTTTGGATTATGTTGGAGTTAAAGACTTACAAACCCCCAGTTATCTCAAGCGAGCAGTGGAGACAGTAATGAGAATCCATCTTGAGGAGCCGCCAGGAGATATCTTAGTGTTTTTGACTGGCCAGGAGGAAATTGAGCATGCATGTGACAGGCTGTTTGAGGCAGCTGAGAATGTTGATTATTCACATGACATCTATTACAATGAAGTCGAGGCCATGATGATTCTTCCTCTGTATGGATCCATGGTAACAGAATTGCAGAAAAGAGTCTTTGATCCTCCCAGATCATCTGTAAGAAAAGTTGTGGTAGCAACAAACATTGCTGCCACATCACTCACCATTGAAGGGATAAGGTATGTTGTGGACAGTGGCTTTGTGAAACAGTTATCTTACAACCCGCGCACAAGATTGGATTCTCTCAATGTTGTACTGATATCAAGGTCAGAAGCAATTCAAAGAGCTGGAAGGGCTGGGAGGACAGCACCTGGGAAGTGCTTAAGACTTTATTCAAATGATGTGTATGAGACAGCAATGACAGAGGAAACAAATGAATTTATTAACGTACGAAACTCCATTTTATCGTTTCGTAGGTTTCAGTACATCGATCCACCAGAGGAAAGAATGATTTTAGAAGCATTGAAACAACTCTATTTCTTTGGTGCATTAGACAGTGGTGGAAATGTAACTGCTCTTGGTCGCAAAATGACCGACTTCCCCCTTTCTCCAGGACTCTCCAGAACGGTCATTCTCTCGGCTAGCCTTGGCTGCGAGGATCTCGTACTCCCAGTAGCTGCCATGTTGTCGGTAGAAAATGTCTTTGTGAGCCCAGGTGGAAAAAAGAACTTATCATTAGCGACGCAGATTCGCAAAGAGCTCGCCGAAGAAGCGGGTGGAACGAATGACTTTGCAACACTCCTGTATATCTACAAGCAGTGTCACTCAAGCTCATCACCTCCACGCTGGTGCCGCGAACATTTTATTCACTGGAGGGCGTTGAAGATGGCCCACAATGTCCACAAACAGTTACAGGAAGTTCTACAGCGACAGGTCGATAGACAATCGCTTCAAAAGGAATTTTTAGAAAACACCAAGAAAAACTCGAAGGAATTGTTTAGAAGAGCTCTTTGCAACGGATATTTCTGTAACGTTGCGAGAAAGTGAAAGCAGCAGTGGTAACAGTTTTCGAACAATGGATGGCCACGGTACTCAAGTCTACATCCATCCTTCCTCTTCGTTGTTTGGAAGCGAAGATCAGCTCGAGTGGATTATTTTCCACGACATCATATGGACTTCAAAAATTTATGTCAGAACCGTGTGCCCGATAAGGTATGAATGGGTGAAGGACCTTCTTCCCAGGTTACACGAAGTGGATAGCTATTCGCTATCGGGATGGGCGGAAGGCAAACTGACCTCCGCTGATCGCCAAGGAGATGCAGAGCTCGTTGGGAAATCTGCTCGTCGCGGTGATCAGAAACAAGCAGAATGCCCTGACGAAACCATTAAAATATCGAAGCGAAATACTGAAGACTCTATAACAGCCGCAAGAGAACGCTTTCTCGAGAGGAAGAGACTACGAAATGGACACCAAGTCACATGACAGGGCTTAAGGCATTTGGCGAAAGCTGATGCTGGATTTGGGGTTATACATAGAAGATCTTCCTTGCCTCAAAGAGTTTTCATGTCCCGTAAATCGGTGCTTGATTCTTCAAAAGGAAGTGAGATGGGGGCAGAGAAGAATCTTTGCAGCCATATAAACTAACTTCGAACGAAGGATCCTCATAGCCAACCAAAACGCAAAGCCTGAAACATGGTCACAGAAAGACAAAGAATCTGTAACGCGACTTCTTATGAGTGCATACTCTTTTTATGATAAGATACATTATAAGAATGTTGGGGCTGAAATTTCCTAATCTTAAAATTTTTTTTTAGAACATACTTTTGCATGTTGAAGATGTGTAAGAATACATTAAAATCTATGAATGAACTTGATCATCGCATTTTAGTGCTGCTTGAGCAGCCATGTCTTCGTTCCTTGATGTGAAAACAATCTCCTTGAAATGTGATTGTTAAAAAAGGCGAAATGTGCATAAAACTGTCATTCTTCAGACACTTTCCTGCATTCACCTCAGTTTTCATACGGTGAGGGCTGAGCTCCTTTCAGATTATATTGAAAGGCCTCTATCATGATCGACTAAAATGTTCGTGCAAAGACGTCATTTTTTTTAACAATGCTATTTCGTATGATGTATCAAGCGCGTTCTCATTGGAGGGTTAGTCCAGAATTTCGTTGTATCAAATATGGTGTAACTTTTCTATGAAAGATAATAAATGAAACTTTTATTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XI69	Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus OX=10116 GN=Dhx40 PE=2 SV=1
Q8IX18	Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens OX=9606 GN=DHX40 PE=1 SV=2
Q6PE54	Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus OX=10090 GN=Dhx40 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000316 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF04408 all species →	HA2_N	Helicase associated domain (HA2), winged-helix	Domain	Interproscan
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR048333 all species →	Domain	Helicase associated domain (HA2), winged-helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0148.g78.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.