Gene detail

Detailed information of amic_s0149.g17.t2 in Acropora microphthalma

Genomic Location: sc0000149_pilon:303416...319865
NR annotation: XP_044172302.1, uncharacterized protein LOC114953813 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0149.g17.t2

TTAGCACTTGAGTGCTACTCTGTAAATTCGAGGGATGAGTTCCAATGACAATCGGGTAGTAGAGATTTCAGATCCCGTGGAATCATCTAAGCAAGCTGTGACAGTGAATTTTTTCATTGAGGATAGTTATGAAGATATAAAGAATGCCAAAAAATTGTTTCAGTGGAACTGTGAGAGACAACAGGAGTTTATTGAAAAGGGCAGAGGCACCCTAAGGGATGTAGAGAGAAAGATTGAATTCAACAAGGCTGTGGCTGTGGCAGATGATTTGTTTTTGTCACAAGAGAAAAATGCTGCTGGCAGCAATTCCAATGGAAAGGTGTCTCCTTCTGTAAAATCAAGATGTGTAACAGACCAAAAGGGAAAAGCGAAATTAAGCAAGAGCAGAAAAATGGAGATAACTGCAACAAGGAGAAGTCCAAGAAATTTGATGACAAATGGTAATTCACATGATCGTTTGGCATCAAGTACGGAGAATGAGAGGACGGACATGAAATTAAACTCAACTCAATGTAATGGTAGACACAGGACATGTTTTCCAGCAGAATATCAGGAGACTAGAACAAAGACAAATGGTGAAGTTTCAGCAGGTGATTGTTGCCCTAAAATGCAACACTCAGATTATAGTGCAACACGTCAAGATTTTCAAGAGAAAACAGCATCAGAGACTGATTTAAATGTGTCTGCATCATTGGGAAGGAATAGAGGAAAACAGCCCATCAAAAGGAGATTCAATGAAGAAGGCGGTGCTTTGTATACACGACTCATTTATCCCAAAAAGTCAAGAAAGGGTGAGCAACATGGTGTGGTGAACAACAACTCATTTGAAACTACATCAGTGAAGAGCAAACTGGGTGAAGGCATAGAGCGTGACAAGAGCATTGTTAACAGTAGTCATGAAACTGTTCCTGAATCTGGAGAAACTTCAGATGAAGAGTTATTTAAGGAGTCATTTTCACCCAAAAAAGAAGAAAATAAATTTTCAGTTGATGATATAGTATGGGCAAAATTTTACAGAGAGCCTTATTGGCCTGCTGTGATAAAAAAGGTCAATGAGAAAACAAAAACAAATCCAAAAAAGAAATACGTTGTGAAATTTCTTGGCTGGACTGACTGCCTGTTCAAAATACAACCTAACAAATTGGTCCATTTTGCTTGCAATGCAAAGCAACGATCTGAATTCATGGACATGAAAATGGGCAATGAAGAACTTCAAGGGATGTTTGATAAGGCCCTTGTACAAGCAGAGGATTTCATGAATAGGAAAGGGTTAGGGAAAGGCTTTGAGGATGAAAAGGATGAAGAGCATTTTCAAATTTTTGAGGACGATGATGCTGAAAATGGGGAAGAATCAGTTGTGAAGAAAGCTCCAAATGTGCCTCCATCAACAAGCCTGTCAGAGTGCAGAAAATCTTTGAGGGCAAGAAAACCTGTGTCTAAGTACAGCAACATTTTGTCGTACATCAGGCAGGCAAAGCCAATATTAAAGGACATACTGAATGGGACAAAACACTCTGATCGCCATGAAACTTATACCCGCGGCAGAGTGAGTGAGAAAAACTTTCTCAAAAAACAGTCAGGATTTGGTCCAGTTGCAGACGAAACTCTGCGCGAGGGAATAATGGACCTGCTGATGGATTTCTACCGCGAGTTCTGTGGGACAGTTGATTTAACTTATATCTCCGATGTCTGGTTACCCGAGGCAATCATCCAGTCCATAAGTAAGATGGATAACGTGGATACAGAACTGGCAGAGGAAAAATTCCTGGCTGGTTTTAAGGATGCCGTAAGCTATGATGAAGTTTTTCAACTAATCACCAAGCTTAAACAGAGAAAATCAACCGCAGAAAAAAACGAAGAAATACTTGGATGTGCTGAAAGAGCCGCAAGTTGAAGTGTGTGTAGGATGTCGATGTGGTGTTTTATTTATTTATTTATCAATTGAATTGCTCTTGAAGGCCTCTCACGAAAAATTGCGGAAAAAATCACTTTGATAGTTGTATAGTAGGGAATTTAGTGCGAAAAAAATTTTAAAATCTAGAATCATTAAGAGGAGGCTGATATTTTGAAGCGTGTTGTAGGACCCGTGCAAGCGCGGTAAAATCGCGGTTTATGGTTTAATTGTTGTCAAAACGTAGCAAATTCTTTCAACTTTTGAGAGGAGAAAAACCGGAACATTATTGTATGAGACCAGGAAGAGCCATGGTATTCGGTAAAATCTTGAAATAAATAAGTTGAATTGTATTATATTATCGAACCTTAGTTTATAAGAAGAGTTGTATAGATATGCAAACTAATTGTAGGAGAGAAATGAAGCTGTACGCTTTTTTTCGAAAAGTATTTTAGTCATTTCTTTGACGCAAACCATCTCATCATCCATTGTCGATAGTTTTGTGGCTATCTTAAAGATGCCATGTATTAAATTAGTCACCTAATGTAATTAAATTATGATTGAAAAT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004942 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan
PF20886 all species →	PWP3A-B_C	PWWP domain-containing DNA repair factor 3A/B, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035504 all species →	Domain	MUM1-like, PWWP domain	Interproscan
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR040263 all species →	Family	PWWP domain-containing DNA repair factor 3A/3B/4	Interproscan
IPR048795 all species →	Domain	PWWP domain-containing DNA repair factor 3A/3B/4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31333 all species →	PWWP DOMAIN-CONTAINING DNA REPAIR FACTOR 3 FAMILY MEMBER	Interproscan

Gene Ontology

No Gene Ontology signature was detected for amic_s0149.g17.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23386	PWWP3, MUM1; PWWP domain-containing DNA repair factor 3	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.