Genomic Location: sc0000149_pilon:327996...333255
NR annotation: XP_029186063.2, survival motor neuron protein-like isoform X2 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0149.g20.t1 |
| Transcript |
| amic_s0149.g20.t1 |
| Protein |
| amic_s0149.g20.t1 |
| UniProt accession | Description |
|---|---|
| O18870 | Survival motor neuron protein OS=Bos taurus OX=9913 GN=SMN1 PE=2 SV=2 |
| Q8HYB8 | Survival of motor neuron protein OS=Felis catus OX=9685 GN=SMN1 PE=2 SV=1 |
| P97801 | Survival motor neuron protein OS=Mus musculus OX=10090 GN=Smn1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005844 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20635 all species → | SMN_YG-box | Survival Motor Neuron, YG-box | Domain | Interproscan |
| PF20636 all species → | SMN_G2-BD | Survival Motor Neuron, Gemin2-binding domain | Domain | Interproscan |
| PF06003 all species → | SMN_Tudor | Survival motor neuron protein (SMN), Tudor domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR002999 all species → | Domain | Tudor domain | Interproscan |
| IPR040424 all species → | Family | SMN complex subunit Smn1 | Interproscan |
| IPR047298 all species → | Domain | Survival motor neuron protein, Tudor domain, eumetazoa | Interproscan |
| IPR010304 all species → | Domain | Survival motor neuron, Tudor domain | Interproscan |
| IPR047313 all species → | Domain | Survival motor neuron protein, C-terminal oligomerization domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR39267 all species → | SURVIVAL MOTOR NEURON-LIKE PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006397 all species → | Biological Process | mRNA processing | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13129 | SMN; survival motor neuron protein | - | Spliceosome | ko03041 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |