Detailed information of amic_s0149.g20.t2 in Acropora microphthalma

Genomic Location: sc0000149_pilon:327996...333255
NR annotation: XP_029186062.2, survival motor neuron protein-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O18870Survival motor neuron protein OS=Bos taurus OX=9913 GN=SMN1 PE=2 SV=2
Q8HYB8Survival of motor neuron protein OS=Felis catus OX=9685 GN=SMN1 PE=2 SV=1
P97801Survival motor neuron protein OS=Mus musculus OX=10090 GN=Smn1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005653 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06003
all species →		SMN_TudorSurvival motor neuron protein (SMN), Tudor domainDomainInterproscan
PF20636
all species →		SMN_G2-BDSurvival Motor Neuron, Gemin2-binding domainDomainInterproscan
PF20635
all species →		SMN_YG-boxSurvival Motor Neuron, YG-boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002999
all species →		DomainTudor domainInterproscan
IPR047313
all species →		DomainSurvival motor neuron protein, C-terminal oligomerization domainInterproscan
IPR010304
all species →		DomainSurvival motor neuron, Tudor domainInterproscan
IPR047298
all species →		DomainSurvival motor neuron protein, Tudor domain, eumetazoaInterproscan
IPR040424
all species →		FamilySMN complex subunit Smn1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR39267
all species →		SURVIVAL MOTOR NEURON-LIKE PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006397
all species →		Biological ProcessmRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K13129SMN; survival motor neuron protein-Spliceosomeko03041deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP