Gene detail

Detailed information of amic_s0149.g41.t1 in Acropora microphthalma

Genomic Location: sc0000149_pilon:633318...639220
NR annotation: XP_044185065.1, calumenin-A-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0149.g41.t1

TGTTGGTGCCTTGTTACTCGAGCTTTCCGTAGTAATGACCCAGTTTTATTTCTAAGGAAAAGTTTGCAGGGCTTGAAGTAATTTCCGTTATTGCTAGCATTTCCAGAAAGAAATAAGACGAAGAATGAGAAGAGCCATTCTCTTCAAAAGAAAAGAAATCAACAGTTCTTCGTTCACTCGTTTCAAACTCCAAAGATATTTCATGACAGACATTTTAAAACTGCGAAAAACTTCCGGTTATCACCCCTGTTTTGTCACTTCCGTTCCAAGCATCTGGAAATTCTTAGTCACGTAAGGTTTAAGGATCGCTCGGTGGTTTGGAAGGGATCTTTGTTTTAAACTATTTCGAGGGATTTAAGGCTTAAAGCCTTCAGTATACTATATTCTAGTATGCTATTTGCCCTTTTTCTCTTCTCTTGTGTCTTGTATCCACGATGGGGAATTTTCGGCGATAAATCTAGACCAAGTGTTGTTGACTCGTATCCCGAAGCAGGACAAACCGACCAAGTGAACAAAGACAAGGAAAAGGATAAGCTTAGGTTGGTGTTCCCAGTGATAGACACTAATGGTGATGGCCAAATATCTGTCCAGGAACTCGCTTCACGGACTGAGATGAGCATGAAAGCTTTTTACCGGCAAGAAGCCGCTACGCGATCAAAGGAATTAGACACGAATGGGGACGGCAAGGTGACATGGGAAGAATACACAAATGAAGCTGAGAAAAGTGGAGCCTTTACAGAGCAGCAAAGAAAGCGCGATAAAAGAAGATTTTCCTTTGCCGACTTGAACAAAAATGGCTGGCTGTCAAGTGACGAACTTCTTTCGGTTTTCCATCCAGAGGAAAATCCGCACATGTTTGCAATCATAGTAGAGGAATTTATGGAGTTTGCAGACAGCGACAGAGACGGTTATCTCTCATTTGATGAATACAAAGTGACAACAGTAGATTCTGGTGAAACAAACCTTCTCTCTGTTGATAAATCTTTCAAGAGGTTGGATAACGATCAAGACGGCAGACTTGACAAAGATGAAACGAAGTTGTGGCTGTCAGCAATTAGCACGATTTCTCAGGCAAAGAACCAGGCCCAGCGACAAGTTAAAATGGCAGATGATAATAAGGATGGTGTTTTAAGCCAAGAGGAAATGTTGAGGCACATACTACTATTTACTACTGGAAGTCAAAAGCACAAGTCTCAAGGATCGGTTAAGAACGAACTGTAACGTTTGTGCTAAAAATGAGCTCAAACTACAAAAGTGTTTTCGTTTCAGGGCGGAAAAATTCGGATGTTTGAACTAGCTTCTTGGAATTTGCCTTTTAGAAAGACCGACCGCATCTTTACGTTTTCCTTTCCTCTTTAGTGTTGGCAAATCATGAGAAGAAAACAGTTTCTTAAGGAGGTAAATTTCAAAATTAAAATATTAGGCAATAATTTTTGTTCACAGCTGCGTTAGTGAGGGATATACTCAGTTTTGACCGTGCAGATCACAGGCTCTCAGCTTATTTAGAGTTTTTTATACTAAACAGTATTAGTTCTTTTAGCCAGAGTCAAAGAGACACATGACTCTTAAGTGCACATAAATTTGCCATtttatttgtttgcttgtttgtttgtttgtttgtGCACTGATATCTCAGTGGTTTTCGTGACGATCGATCAATCAAAGACCAATGCTGGATTCAAAACGGAATGTCGTCATTCAACCACGTAAATACTGACGATGGGCTTCGAAATGACTTATCATCTACAGCCCCGGAAAATTGAGGTATCTGTTGAGGTACTTTGCGATCCCTCTTTTTGACTTTACTCAGCACGTTTGACGCTCTACACACTGTCGATAAGAGATCAAGTATTGGCCAGATTTATCCTAATTTCTTTCCCTAAAATTGGAAACTGCGCAATGCTTCGTCCAGTGAGCTTGCTCCTTGAATAACTTGGTAGTATATCTGCAATGTAATGACTGATTCCAAAATGCTGAACAGCAGCAAAATACAAACCTTTCGAGTTTTAAATATATTGTTCACGTGAAGAAAAAGAAAAAGAATTTTAGTGC

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000528 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10827 all species →	RETICULOCALBIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19934	SDF4; calcium-binding protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.