Gene detail

Detailed information of amic_s0149.g46.t2 in Acropora microphthalma

Genomic Location: sc0000149_pilon:660348...690061
NR annotation: XP_029186073.2, elongator complex protein 1-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0149.g46.t2

ATGCGGAATCTTGAACTTTTAAGGAGTTTCCCGTGTCTGGAGCTGGCTGGAGTTAATGGTTCATTTTGTTTCACAGTCGATTCTGAGTCTGGTGTTGTATACACTGCTAATTCTTTAGCAGTGACTGGCTTCCAACCTTCCTGTCAGCAGGTTGTATGCTCAGTCTCTCTTGTGTGTGAAGGGTATTTGCCTGAAGATGGCAGTGGTTATGTGATAGGAATCCAGCATTTACCAGACTTGGACTCTGTATGTGTGGCCACTGGTAAAGGAGATGTGATTCTCTGGAATATAGTCACAAAACAGATTGAATGTGTTGGCAGTGTGGACAGTGGTTTAAAATCCATGGCATGGAGCCCAGACCAGGAACTTGTGGTTTTCATGACAGGAGAGGGAACACTTATCATGATGACACAAGATTTCAATGTAATTTGCGAGTTTCCTTATCACTCTGAGGAATTTGGAGAAGAGAAGCCAATTACTGTTGGATGGGGCAAGAAGGAAACACAATTTCATGGTTCTGTGGGAAAACCAACTGCTGCTAGTTTACAACAAGTGGCTGTCAGGCCTGCTGCAGAGTGGGATGATAAGATGCCAAGAATAAGCTGGCGTGGGGATGGACAGTTCTTTGTTGTTAGTGCTATTCATCCACAAACATGTGTGAGGACATTACGAGTTTGGAACAGAGAAGGAATTCTTTCCTCAACCTTTGAAACTGTTGATGGTTTGGAGCAAGCACTGTTCTGGAAACCTTCAGGTAGTTTGATTGCTTCATCCCAATGGAAACCTAACAACAGACACGAGATAATATTCTTTGAAAGAAATGGCCTCAGACATGGAGAATTTTCATTGCCATTTGACAAGATGGAAATAAAGGTCATAGAAGTATCGTGGAATATTGATTCAACTGTTTTAGCTGTGTGGGTAGAGGAACTGCCATCAAAAGGATCATCTGAAGATTTTATTCCAAAATCTTATGTTCAGCTGTGGAGTATGAATAATTACCACTGGTACTTGAAGCAGCAGATTGAATTCCCAGCATCACTTGCAGACCAAGTGGCTTGCTTTGTTTGGGATCCAGAGGCTTCCCTGACGCTGCATGTGATGACAGTTGGAGGACATTACTATCACTATTCTTGGTGCTGGAGCACAGCACATAGTGAAGGAACTTGTGAGCAGAATATCTCCACAGTTGCTGTCATAGATGGAGAGTGGGATGATAAGATGCCAAGAATTAGCTGGCGTGGGGATGGACAGTTCTTTGTTGTTAGTGCTATTCATCCACAAACATGTGTGAGGACACTACGAGTTTGGAACAGAGAAGGAATTCTTTCCTCAACCTTTGAAACTGTTGATGGTTTGGAGCAAGCACTGTTCTGGAAACCTTCAGGTAGTTTGATTGCTTCATCCCAACGGAAACCTAACAACAGACATGAGGTAATATTCTTTGAAAGAAATGGCCTCAGACACGGAGAATTTTCATTGCCATTTGACAAGATGGAAATAAAGGTCATGGAAGTATCGTGGAATATTGATTCAACTGTTTTAGCTGTGTGGGTAGAGGAACTGCCATCAAAAGGATTGTCTGAAGATTTTATTCCAAAGTCTTATGTTCAGCTGTGGAGTGTGAATAATTACCACTGGTACTTGAAGCAGCAGATTGAATTCTCAGCATCACTTGCAGATCAAGTGGCTTGCTTTGTATGGGATCCAGAGGCTTCCCTGACGCTGCATGTGATGACAGTTGGAGGACATTACTATCACTATTCTTGGTGCTGGAGCACAGCACATAGTGTAGGAACTTGTGAGCAGAATATCTCCACAGTTGCTGTCATAGATGGAGCAAAGGTTTTGTTGACACCAATGAAACACATGGTGGTTCCACCTCCTATGTCATCACATTCTGTTGAGCTTTCATCACCAGCTCTTATTGTCAGTTTTGGTCCACCACCCTCATGTAGTGATATGGCTGTATTGATTTCCAATGGAAGTGTTGTGTTGTTCAAATTGCCAGTAGAAAATGGCATTAAAGAAGAGTTTAAAACTCCAGGGAAGGCACCAACACTTGTTGGAACTTACAGTTTTGGCACTTCTGATAACACATCAGTGTGGAGAGGCCCTCTGTGTTGGCGTCAGTTGATCTGGTGGAAAGAGAACACCTTGATAGCAGTTGGATGGGATACACAGATGCATGTAGATGTTGTTTGTGAATTCCTAATACAGATGGGGAAAGCCAACAATGTGATTATCCTCAGACACAAGACTTTAACAGAAGAGCCAGTTCTTCGCTTATGTGTTAGCCACTACACAGTGTCAGTTTTTGTGGAGCTTAGAAATGGAAATTTGTTGAGATACTTTTCAGATGAAAATCAAGCGAGTTTATTGCCTTGGGTAAACAGTCATGGTGAAGAGGTCTCCTTAACACGGCCATGTCAGACAATGAAGATTGCAGTTGTGGGAAATGAGGAAGTTGCATTAGGTTTAACTGAACATTCAAGGTTTTATGTCAATAACAAAGAGGTATCGTCAAACTGTACTTCCTTTGCGGTTCATGATGAATTTATTTTACTAACAACACATGCACACACACTGCGATGTATCAGTCTATTGCCTGATTCTCGAGGTTTACCAGTATTGTTGGAAGATCAACCACACCCATTGGATGAAAATATCCGACGTGTTGAGAGAGGTTCAAGAATAGTTGTAGCTGTTACTCAAGACACAAAAGTTGTGCTCCAGATGCCTCGTGGTAATTTGGAGACTATCCATCCTCGATCACTGGTGTTGTCATACTTACAGAAGTGTTTAGATGGGCTTCAATATCGAGATGCCTTTATAGCAATGCGTAGACACAGAATCAATCTGAACTTAATGCATGACCACAATTCAAAGCTGTTCCTTAACAATTTGGAGTCATTTATTAGTCAAGTGGTTTCCGTCAACTTTATCAACCTCTTTTTGTCTGACCTCAGAGAGGATGATGTCACTGCTACAATGTATGCTGATTACTATTCACAGACAAGAAAAGTCTCTGATGTGTCACCTCCTGAAGGCAACAAAGTTGATCGAGTTTGTGATGCAATACGGGCAAAGTTAGAACTTGCGGGACATAACAAGTATCTTCTGTCAATATTAACAACTTACGTGAAGAAAACAGAGCCGGCCTTAGAACATGTTTTGACAATTATCAAAGATTTGAAAGTCAATCCTGTAATTACCTCAGATTCAGAATGTGTGACGTCAGAGGAAGCCCTAAAGTATGTGCTCTTTCTTGTAGACGTCAATCAAATGTATGACATTGCTCTTGGAATGTACGATTTTAATTTGGTCCTCATGCTGGCAGAAAAATCTCAGAAGGACCCAAAAGAATATCTTCCATTTTTAAATAATCTTCAGAAGATGGAAACAAATTTTCAAAGATACAGCATTGACAGACATCTAAAACGGTACAGCAAGGCTGTTACACACTTGAGTTTGTGTGGGGCTGAACATTTTGAGGAGTTAGTTTCACTTGTGAAGGAACACTGTTTATTCAAGGAGGCACTGAAACTTTATCCAAAATCCACTCAGCAACACAAGGAGCTCTCAATTGCTTATGGAGAATACCTAGCTGAAAATAACAGACAGGAGGAAGCTGGACTAGTCTTTACACGTTGTGGGGCACATGGACAAGCATTGACCTCTTTCCAGAAGAGCGGGAACTGGAGACAGGTCTTTTGCATGGCGTCTTTGCTGCATTACACAAAGGAACAAGTGATTTCATTGGCCAGATCTGTGGCAGGCCATTTGCGTGGGCACAAGAGATATCTTGAAGCATCTAGAGTCATGGAGGAGTATGCCCAAGACCCAGAGGAAGGAATAGCTGTTCTTATAGATGGCCTGCAGTGGGAAGAAGCTCTGAGATTGATGTACAGGCATGAAAGGATGGACATAATAGAGACGCATTTGAAAGGAGCATTGGACGAAGCTTACCATCGTCATATAAGTGCAATTGAAGAGCAAAAAGAGTTGTTTGAGAAATACACCAAGCGTCTTCAGGTTGTAAGAGAGACAAAACGCCTACAGAGTATAGAATTTCAGGAGGATGGTCTGGCACGAGACGACACAGACATTTTTTCGGACACTAGCAGTGTTGGAGATAATTCAGAGTACACAACTAGCACCAGCTCACGTGGGACAAGATCAACCGGGAGGTCGTCAAAAAATCGACGGAAAGCCGCGAGCAAGATGTATAGCTTGAAGGAAGGAAGCCAGTTTGAGGACTTAGCACTGATGAAAGCACTTTCAGAAATTATTCAAACTTTGCAAAAGTCGACTGATGATGTAGGCTCGTTGCTCAAGATGATGATCTTATTTGATAATGAAGAAGAAGCGAGAATTCTGCAGAGAAACTTTGAACAACTCATCCTAATGGTAGAAAAATCACTCGGTATCATTTGGCCACCAGAGGACACCACAGGCTACCAGGCTCATGCATCACAGATAACAGGTCCAGGTGCCACTGTCAACAGTATCATTGCAGCCATGAAGAGTGGGGAACAGGTTGCAGCTTCTTCACCGCCAAAAGATGCTCCAGAAAGACCTCCACCACCAAGTGTTAAAATATCTTCAAACTGGAAACTGGAGCAACTACAGTCCTGA

Transcript

amic_s0149.g46.t2

TAGTTATTTGAAGCAAAAGTGGTGTTGATATTCCCTGGCGAGTTATCTGGAACTGACAGGCATCCATAGAGGTCGGATTAAGCATGACCTTGTTTTCACGTGGGGCGATTTGAAGTGTGCTCGTTAGGAAGGGAGATAAAGCTTTCCTGACAATTCCAGTCGAAACGAGAGAAAGATTAAGAAATGCGGAATCTTGAACTTTTAAGGAGTTTCCCGTGTCTGGAGCTGGCTGGAGTTAATGGTTCATTTTGTTTCACAGTCGATTCTGAGTCTGGTGTTGTATACACTGCTAATTCTTTAGCAGTGACTGGCTTCCAACCTTCCTGTCAGCAGGTTGTATGCTCAGTCTCTCTTGTGTGTGAAGGGTATTTGCCTGAAGATGGCAGTGGTTATGTGATAGGAATCCAGCATTTACCAGACTTGGACTCTGTATGTGTGGCCACTGGTAAAGGAGATGTGATTCTCTGGAATATAGTCACAAAACAGATTGAATGTGTTGGCAGTGTGGACAGTGGTTTAAAATCCATGGCATGGAGCCCAGACCAGGAACTTGTGGTTTTCATGACAGGAGAGGGAACACTTATCATGATGACACAAGATTTCAATGTAATTTGCGAGTTTCCTTATCACTCTGAGGAATTTGGAGAAGAGAAGCCAATTACTGTTGGATGGGGCAAGAAGGAAACACAATTTCATGGTTCTGTGGGAAAACCAACTGCTGCTAGTTTACAACAAGTGGCTGTCAGGCCTGCTGCAGAGTGGGATGATAAGATGCCAAGAATAAGCTGGCGTGGGGATGGACAGTTCTTTGTTGTTAGTGCTATTCATCCACAAACATGTGTGAGGACATTACGAGTTTGGAACAGAGAAGGAATTCTTTCCTCAACCTTTGAAACTGTTGATGGTTTGGAGCAAGCACTGTTCTGGAAACCTTCAGGTAGTTTGATTGCTTCATCCCAATGGAAACCTAACAACAGACACGAGATAATATTCTTTGAAAGAAATGGCCTCAGACATGGAGAATTTTCATTGCCATTTGACAAGATGGAAATAAAGGTCATAGAAGTATCGTGGAATATTGATTCAACTGTTTTAGCTGTGTGGGTAGAGGAACTGCCATCAAAAGGATCATCTGAAGATTTTATTCCAAAATCTTATGTTCAGCTGTGGAGTATGAATAATTACCACTGGTACTTGAAGCAGCAGATTGAATTCCCAGCATCACTTGCAGACCAAGTGGCTTGCTTTGTTTGGGATCCAGAGGCTTCCCTGACGCTGCATGTGATGACAGTTGGAGGACATTACTATCACTATTCTTGGTGCTGGAGCACAGCACATAGTGAAGGAACTTGTGAGCAGAATATCTCCACAGTTGCTGTCATAGATGGAGAGTGGGATGATAAGATGCCAAGAATTAGCTGGCGTGGGGATGGACAGTTCTTTGTTGTTAGTGCTATTCATCCACAAACATGTGTGAGGACACTACGAGTTTGGAACAGAGAAGGAATTCTTTCCTCAACCTTTGAAACTGTTGATGGTTTGGAGCAAGCACTGTTCTGGAAACCTTCAGGTAGTTTGATTGCTTCATCCCAACGGAAACCTAACAACAGACATGAGGTAATATTCTTTGAAAGAAATGGCCTCAGACACGGAGAATTTTCATTGCCATTTGACAAGATGGAAATAAAGGTCATGGAAGTATCGTGGAATATTGATTCAACTGTTTTAGCTGTGTGGGTAGAGGAACTGCCATCAAAAGGATTGTCTGAAGATTTTATTCCAAAGTCTTATGTTCAGCTGTGGAGTGTGAATAATTACCACTGGTACTTGAAGCAGCAGATTGAATTCTCAGCATCACTTGCAGATCAAGTGGCTTGCTTTGTATGGGATCCAGAGGCTTCCCTGACGCTGCATGTGATGACAGTTGGAGGACATTACTATCACTATTCTTGGTGCTGGAGCACAGCACATAGTGTAGGAACTTGTGAGCAGAATATCTCCACAGTTGCTGTCATAGATGGAGCAAAGGTTTTGTTGACACCAATGAAACACATGGTGGTTCCACCTCCTATGTCATCACATTCTGTTGAGCTTTCATCACCAGCTCTTATTGTCAGTTTTGGTCCACCACCCTCATGTAGTGATATGGCTGTATTGATTTCCAATGGAAGTGTTGTGTTGTTCAAATTGCCAGTAGAAAATGGCATTAAAGAAGAGTTTAAAACTCCAGGGAAGGCACCAACACTTGTTGGAACTTACAGTTTTGGCACTTCTGATAACACATCAGTGTGGAGAGGCCCTCTGTGTTGGCGTCAGTTGATCTGGTGGAAAGAGAACACCTTGATAGCAGTTGGATGGGATACACAGATGCATGTAGATGTTGTTTGTGAATTCCTAATACAGATGGGGAAAGCCAACAATGTGATTATCCTCAGACACAAGACTTTAACAGAAGAGCCAGTTCTTCGCTTATGTGTTAGCCACTACACAGTGTCAGTTTTTGTGGAGCTTAGAAATGGAAATTTGTTGAGATACTTTTCAGATGAAAATCAAGCGAGTTTATTGCCTTGGGTAAACAGTCATGGTGAAGAGGTCTCCTTAACACGGCCATGTCAGACAATGAAGATTGCAGTTGTGGGAAATGAGGAAGTTGCATTAGGTTTAACTGAACATTCAAGGTTTTATGTCAATAACAAAGAGGTATCGTCAAACTGTACTTCCTTTGCGGTTCATGATGAATTTATTTTACTAACAACACATGCACACACACTGCGATGTATCAGTCTATTGCCTGATTCTCGAGGTTTACCAGTATTGTTGGAAGATCAACCACACCCATTGGATGAAAATATCCGACGTGTTGAGAGAGGTTCAAGAATAGTTGTAGCTGTTACTCAAGACACAAAAGTTGTGCTCCAGATGCCTCGTGGTAATTTGGAGACTATCCATCCTCGATCACTGGTGTTGTCATACTTACAGAAGTGTTTAGATGGGCTTCAATATCGAGATGCCTTTATAGCAATGCGTAGACACAGAATCAATCTGAACTTAATGCATGACCACAATTCAAAGCTGTTCCTTAACAATTTGGAGTCATTTATTAGTCAAGTGGTTTCCGTCAACTTTATCAACCTCTTTTTGTCTGACCTCAGAGAGGATGATGTCACTGCTACAATGTATGCTGATTACTATTCACAGACAAGAAAAGTCTCTGATGTGTCACCTCCTGAAGGCAACAAAGTTGATCGAGTTTGTGATGCAATACGGGCAAAGTTAGAACTTGCGGGACATAACAAGTATCTTCTGTCAATATTAACAACTTACGTGAAGAAAACAGAGCCGGCCTTAGAACATGTTTTGACAATTATCAAAGATTTGAAAGTCAATCCTGTAATTACCTCAGATTCAGAATGTGTGACGTCAGAGGAAGCCCTAAAGTATGTGCTCTTTCTTGTAGACGTCAATCAAATGTATGACATTGCTCTTGGAATGTACGATTTTAATTTGGTCCTCATGCTGGCAGAAAAATCTCAGAAGGACCCAAAAGAATATCTTCCATTTTTAAATAATCTTCAGAAGATGGAAACAAATTTTCAAAGATACAGCATTGACAGACATCTAAAACGGTACAGCAAGGCTGTTACACACTTGAGTTTGTGTGGGGCTGAACATTTTGAGGAGTTAGTTTCACTTGTGAAGGAACACTGTTTATTCAAGGAGGCACTGAAACTTTATCCAAAATCCACTCAGCAACACAAGGAGCTCTCAATTGCTTATGGAGAATACCTAGCTGAAAATAACAGACAGGAGGAAGCTGGACTAGTCTTTACACGTTGTGGGGCACATGGACAAGCATTGACCTCTTTCCAGAAGAGCGGGAACTGGAGACAGGTCTTTTGCATGGCGTCTTTGCTGCATTACACAAAGGAACAAGTGATTTCATTGGCCAGATCTGTGGCAGGCCATTTGCGTGGGCACAAGAGATATCTTGAAGCATCTAGAGTCATGGAGGAGTATGCCCAAGACCCAGAGGAAGGAATAGCTGTTCTTATAGATGGCCTGCAGTGGGAAGAAGCTCTGAGATTGATGTACAGGCATGAAAGGATGGACATAATAGAGACGCATTTGAAAGGAGCATTGGACGAAGCTTACCATCGTCATATAAGTGCAATTGAAGAGCAAAAAGAGTTGTTTGAGAAATACACCAAGCGTCTTCAGGTTGTAAGAGAGACAAAACGCCTACAGAGTATAGAATTTCAGGAGGATGGTCTGGCACGAGACGACACAGACATTTTTTCGGACACTAGCAGTGTTGGAGATAATTCAGAGTACACAACTAGCACCAGCTCACGTGGGACAAGATCAACCGGGAGGTCGTCAAAAAATCGACGGAAAGCCGCGAGCAAGATGTATAGCTTGAAGGAAGGAAGCCAGTTTGAGGACTTAGCACTGATGAAAGCACTTTCAGAAATTATTCAAACTTTGCAAAAGTCGACTGATGATGTAGGCTCGTTGCTCAAGATGATGATCTTATTTGATAATGAAGAAGAAGCGAGAATTCTGCAGAGAAACTTTGAACAACTCATCCTAATGGTAGAAAAATCACTCGGTATCATTTGGCCACCAGAGGACACCACAGGCTACCAGGCTCATGCATCACAGATAACAGGTCCAGGTGCCACTGTCAACAGTATCATTGCAGCCATGAAGAGTGGGGAACAGGTTGCAGCTTCTTCACCGCCAAAAGATGCTCCAGAAAGACCTCCACCACCAAGTGTTAAAATATCTTCAAACTGGAAACTGGAGCAACTACAGTCCTGATCAGCTGAGGAGGAAATGCTCCTTAATTAAGGAAAGGGACTGTGAACATTCCCAGATATGGAGAATGTGTCAGCACATGCTTGCCAAGTCTCACTCATGTTCTAAAGAGGTTCTTGTTTTACTCCAACTTTACCTGTTGATACACGAAACACACAATGAACTAGGGATATGAAGCACCATACAAATTTATTTAACCAGGAAAAAAAACAATTACTTTGAAAAGAACTTAAAGTCCCCTAGGCCTGTTCCCTTAAATGGGATCCTTTGACCAAAAAGAAACTTATCAGTCTCAGTATTTTGTCAAGGATGTATAATATTATAATTAAGGGCCACAAGATTTCAGTATATTCTAAAAGCATGCAGACTTGAAAAGAGTTTAATAATAATTAGTGTGCCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95163	Elongator complex protein 1 OS=Homo sapiens OX=9606 GN=ELP1 PE=1 SV=3
Q8WND5	Elongator complex protein 1 OS=Oryctolagus cuniculus OX=9986 GN=ELP1 PE=2 SV=1
Q7TT37	Elongator complex protein 1 OS=Mus musculus OX=10090 GN=Elp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003224 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04762 all species →	IKI3	IKI3 family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006849 all species →	Family	Elongator complex protein 1	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12747 all species →	ELONGATOR COMPLEX PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0002098 all species →	Biological Process	tRNA wobble uridine modification	Interproscan
GO:0033588 all species →	Cellular Component	elongator holoenzyme complex	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan
GO:0002926 all species →	Biological Process	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11373	ELP1, IKI3, IKBKAP; elongator complex protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.