Gene detail

Detailed information of amic_s0151.g2.t1 in Acropora microphthalma

Genomic Location: sc0000151_pilon:3329...12195
NR annotation: PFX31683.1, hypothetical protein AWC38_SpisGene3432 [Stylophora pistillata]

Gene Structure

More details in Jbrowse

Sequence

CDS

amic_s0151.g2.t1

ATGCAAATATGGGCACATGTAGAACACTTTCTTAGCTTGCCAAGAATTTGTCGAaatctgacgtctgccgcagtttgtgtcgctgttctagttacggcgttgattgctcacggaaagGTGTGGACAAGTAGGACACATCCAGCGAGGCTGCCGAAATATTCCGCAGACATCGCCATTGGGAAACGCCAACATGTCTCTGACGCGGGGCTATCAGGGACAGAACACCAGAAGACCACGCCCCAATACTCAAAACTCTGGACAAAGCCATTGATTGGAGCTGCGAACGAGTGTGTTGCTGCAGTTAATGGCCGAGCGTGTTTAGCACTCTTAGACACAGGAAGTCAAATCACTTCAATATCAGAATCATTTTACAATAAGCATTTGCGTGACTGCATAATACATCCTGTGGAGTCGTTATTACGTGTGGTCGGTGCTGCAGGCCAGGATGTGCCATTTCTTGGATACGTCGAAGTTGAAATTGACTTCCCTTTGGAAGAAGCTGGTTTGTGTAGTCGTTTGCAGGCTCTTGTACTGGTAGTCCCTGACAATGCATGTAACCATCAAGTACCACTTGTCATAGGAACAAACATCGTGAGGAAATGCAAAGACCGTTGTGAAGAGCAGGGAGGGGCTGGTTTTCTGCAAAGGACACACACCTCAACTGCATGGAAAAAAGCATATGGATCCATGCGGGTCCGAGAGCGTCTTGTGAGTGGCCACCGGAAGGTTTTAACAAAGGGTCAAGCACTAACAGTGGGAACCCATAAGCGAGTAGTTGTGTGGTGTCAGACGCTTGCATCTCCAGAAAGTCCATCTAAAGCTGTTATTGAACCTTGTGAAGACCTAGCACCTCATATATCGGTGACATCTGGGGTGGTTACCTTGACTTCTGGCTGTAAAAGATGTCTAGTCGCAGTAGAAGTCAACAACGTGTCAGACAAATCAGTTACACTTCCCCCTAAGACTGCGCTAGCTAGTGTACATTTGGCGTCCACCGTCCTTGACAGGTTTGATCAGGACAAGACCCCTGTTGACAAAGAAGTAGTCTACGCCGAGCCGAAGGCGGACATCAGCGATATCGATTGCAATGAAGAGGAACTTACTGAAGCCCAAAGAACCGAATGCAGCCGGTGTTCACAGCAGCTTCAGACGTTCCTGGGGTTTGCGGGATATTACGGCTCCTTCGTGAAGAACTTTGCTAAGATAGCCGAGCCCCTGTACCATCTGATTGGAGGCCGACCACCGAGAGGACGCAAAACACCACCTTTTCCCTGGACAGAGCATTGCCAAGAAGCTTTTGAATGCCTTATCAGTTGCCTAACGTCACCCCCGATACTTGGCTACCCTGACTTCCAGTTACCCTTCACAGTGCATGTGGATGCCAGTAGTACAGGACTGGGTGCCGCTCTCTATCAAACGCAGAAAGGACGGCCCACTGTCATCGCCTACGGCAGCAGGACACTGTCCCCTTCTGAGAGGAACTATTCAGCTTACCGCGGAGAATTCATCGCTTCTAAATGGGCTGTTGCTGAAAAGTTTCGGGACTATCTGTATGGCTCCAGATTCCACGTGATAACCGACAGCAACCCTTTAACGTACTTGGTGACCTCTGGTAAACTGAGCCTAACTGACCATCGTTGGCTGTCTTCGCTGGCCGTCTTTGACTTCGAAATCTCCTATCGCTGTGGCAAAGCCAATGGGGACGCCGACGGACTGTCTCGTATCCCTGTTAGTGGCGGAGAGGGTAATCGGGACGGCCTGTCTGACGAGCAGTATGTGAGGCCCTTCTTGGACCGCCTGAAACCAGTTCAGGGAGATGGCTTTGCCTGCTCACACGAGTCCTTCCAGGCCATGTGCCAGGCCTATTCAATAGATGCTCTTGGTGACGAATCAGCAGAATTGCCAGCCGTTGAAGTTGTGGGTGCTAGGCCAGATGCAGTGGATAATGACCTACCGGCGGATCCAACCTCTTCACAACCCTGGCATTTGAACTTGGTTCACAACTGGGTGGAGCTTCAAAGGAATGATTCAAGTCTGGCAAAGGTGCTAAGGTACTTGAGGGGTGGGCAGCACCCAGCAGGGTCCGAGTTGAAGAAAGAGAATGCTGGGGCTGTACAACTAATTAGAGAGTGGAATCGCCTTGCCATTAGAGACAATGTGCTGCTGCGCCGACGCCTAACAGATGGGTACGAAACATTCCAGTTCATCTTACCAGCAGAATTATAA

Transcript

amic_s0151.g2.t1

CGTATTAACAGAGGATAACAATTTGACTTAACGAAGAAAGCTTTTGTACtttttctttattttgttttcttttatgttGACTGCTCCGAAATAAAATGTTTATGCAAATCTGAGAGAAAGTCATGACTGTGTCGAATATACGCAACGAGCAAAAATATGCAAATATGGGCACATGTAGAACACTTTCTTAGCTTGCCAAGAATTTGTCGAaatctgacgtctgccgcagtttgtgtcgctgttctagttacggcgttgattgctcacggaaagGTGTGGACAAGTAGGACACATCCAGCGAGGCTGCCGAAATATTCCGCAGACATCGCCATTGGGAAACGCCAACATGTCTCTGACGCGGGGCTATCAGGGACAGAACACCAGAAGACCACGCCCCAATACTCAAAACTCTGGACAAAGCCATTGATTGGAGCTGCGAACGAGTGTGTTGCTGCAGTTAATGGCCGAGCGTGTTTAGCACTCTTAGACACAGGAAGTCAAATCACTTCAATATCAGAATCATTTTACAATAAGCATTTGCGTGACTGCATAATACATCCTGTGGAGTCGTTATTACGTGTGGTCGGTGCTGCAGGCCAGGATGTGCCATTTCTTGGATACGTCGAAGTTGAAATTGACTTCCCTTTGGAAGAAGCTGGTTTGTGTAGTCGTTTGCAGGCTCTTGTACTGGTAGTCCCTGACAATGCATGTAACCATCAAGTACCACTTGTCATAGGAACAAACATCGTGAGGAAATGCAAAGACCGTTGTGAAGAGCAGGGAGGGGCTGGTTTTCTGCAAAGGACACACACCTCAACTGCATGGAAAAAAGCATATGGATCCATGCGGGTCCGAGAGCGTCTTGTGAGTGGCCACCGGAAGGTTTTAACAAAGGGTCAAGCACTAACAGTGGGAACCCATAAGCGAGTAGTTGTGTGGTGTCAGACGCTTGCATCTCCAGAAAGTCCATCTAAAGCTGTTATTGAACCTTGTGAAGACCTAGCACCTCATATATCGGTGACATCTGGGGTGGTTACCTTGACTTCTGGCTGTAAAAGATGTCTAGTCGCAGTAGAAGTCAACAACGTGTCAGACAAATCAGTTACACTTCCCCCTAAGACTGCGCTAGCTAGTGTACATTTGGCGTCCACCGTCCTTGACAGGTTTGATCAGGACAAGACCCCTGTTGACAAAGAAGTAGTCTACGCCGAGCCGAAGGCGGACATCAGCGATATCGATTGCAATGAAGAGGAACTTACTGAAGCCCAAAGAACCGAATGCAGCCGGTGTTCACAGCAGCTTCAGACGTTCCTGGGGTTTGCGGGATATTACGGCTCCTTCGTGAAGAACTTTGCTAAGATAGCCGAGCCCCTGTACCATCTGATTGGAGGCCGACCACCGAGAGGACGCAAAACACCACCTTTTCCCTGGACAGAGCATTGCCAAGAAGCTTTTGAATGCCTTATCAGTTGCCTAACGTCACCCCCGATACTTGGCTACCCTGACTTCCAGTTACCCTTCACAGTGCATGTGGATGCCAGTAGTACAGGACTGGGTGCCGCTCTCTATCAAACGCAGAAAGGACGGCCCACTGTCATCGCCTACGGCAGCAGGACACTGTCCCCTTCTGAGAGGAACTATTCAGCTTACCGCGGAGAATTCATCGCTTCTAAATGGGCTGTTGCTGAAAAGTTTCGGGACTATCTGTATGGCTCCAGATTCCACGTGATAACCGACAGCAACCCTTTAACGTACTTGGTGACCTCTGGTAAACTGAGCCTAACTGACCATCGTTGGCTGTCTTCGCTGGCCGTCTTTGACTTCGAAATCTCCTATCGCTGTGGCAAAGCCAATGGGGACGCCGACGGACTGTCTCGTATCCCTGTTAGTGGCGGAGAGGGTAATCGGGACGGCCTGTCTGACGAGCAGTATGTGAGGCCCTTCTTGGACCGCCTGAAACCAGTTCAGGGAGATGGCTTTGCCTGCTCACACGAGTCCTTCCAGGCCATGTGCCAGGCCTATTCAATAGATGCTCTTGGTGACGAATCAGCAGAATTGCCAGCCGTTGAAGTTGTGGGTGCTAGGCCAGATGCAGTGGATAATGACCTACCGGCGGATCCAACCTCTTCACAACCCTGGCATTTGAACTTGGTTCACAACTGGGTGGAGCTTCAAAGGAATGATTCAAGTCTGGCAAAGGTGCTAAGGTACTTGAGGGGTGGGCAGCACCCAGCAGGGTCCGAGTTGAAGAAAGAGAATGCTGGGGCTGTACAACTAATTAGAGAGTGGAATCGCCTTGCCATTAGAGACAATGTGCTGCTGCGCCGACGCCTAACAGATGGGTACGAAACATTCCAGTTCATCTTACCAGCAGAATTATAAAATTAAACAAGACTTACCTGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan