Gene detail

Detailed information of amic_s0152.g16.t1 in Acropora microphthalma

Genomic Location: sc0000152_pilon:196076...204629
NR annotation: XP_029191487.1, ras-related protein Rab-23-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0152.g16.t1

GTGAAATCTTCTTTCGAAAGATGGAACGCTATCATGTCCATTTCATAAGGTTAAAAACTCATCCAGTCGTAGCGATCGACATATTTTCACTCCAGAGTAGACGATTTAACGCCATCCCCGATTCAGTCTTACTTTGCCAATGCACCAATGAGAGAAGTTTCAGTTTGGGTTTTCTTCCTTGACGGGCTCTGTTGTTTATGTTACCATAACAACAAAGCCAAAGGAATAAATTACCCACAGTTCCAGGGGCGAAGCAACCAGCTCGAGGAACAAGTGATAACACCGGTTCCACACCTCTTTCTCTCGAGGCACCTCCAACCGAGCTCACTTTCCATAATTTAGCTTCTCGGGATATTTCCATCCAAGAAAAGAACAAGGAAATTGTACACGGTACAGCAACTCATCGGGAAAGAACGTTGTCTGTGTTTGTATACATTTCCAGGAGCGACACCTTCCCTGCACATAATTGAGCAAGGAGCGATCAATACAAGGAATATTCTACTTCAAGTTTAGCGAGTGGAACTAGTTTGTTACTTTCATCATAAGAGGCGGACAAAAACTTGTAGCTGTAGGCTAGGATTTCGTTTGTCGTCGAAATATCGTGACTAAAAGAGGCGTTTAACTTAAGCTGTTACCAGGGCCATTATGAGAGAGGAAGACGTGGAAGTTGCGATAAAAGTAGTTGTGGTAGGAAATGGAGCAGTGGGAAAGAGTAGTATGATTCAGAGATATTGCAAAGGCATTTTTACCAAAGACTACAAGAAAACGATAGGAGTGGACTTCTTAGAGCGGCAAATAAGTGTTCGTAACGAAGACGTTCGCCTCATGTTGTGGGATACTGCGGGACAAGAAGAATTCGACGCCATAACAAAAGCTTACTATAGAGGGGCACAAGCGTGTGCAATAGTATTTTCAACAGTAGACAGAGATTCCTTTGAAGCCGTAGCAAAATGGCGATCAAAAGTTGAGGAGGAATGTGGTGGTATACCTATGGTGTTAGTTCAAAACAAAATAGATTTGATTGATCAAGCTGTTGTTCAAGTTGAAGAAGCAGAGTCCCTAGCTAAAAAATTGAGGTTAAAATTTTATCGGACATCAGTGAAAGAGGATCTCAATGTAAATGATGTGTTCATGTATCTCTCTGAGAGATACTTAGAGATTTTACAAAATGTTGAAGTTGAGGAACCTAAAACACAACATCAAAAGAATGTTGCTGGGATGTTCAACACAGCGTCACCTGTTAACAACGAGCAGTCTTCAAACAACAATGCCCGGGCTACACAGCAAATAGAAACTGGAGACATTATTACCTTAAAACCAAACAAGCAACGGACAAAGGGAAAGAAAAAGTTGACATGCATGTTGCTGTAATACATCAGTGGTTTAAACAGTAAATTGCCAGTGGTGTGGTGCAAACCACACTAGAGCCAATAAACATTAAATGAAACCACTGACAACAGCATGGGGAGCTGTTTCATGAAGAAATAATAATTGGTCACTTCCATTAATTTGAGCATGCACTTGTGCCATGGAGAGAACAGTTTGGAAAGTGTGTAATTTTACAACACCAGTTTGCAAAAATAGAATTAATTTTGAAACATGCTTGTTTCTTGTTTGCAAGGAACTAGTAATCATAATTTATATATTGGTGTTACTGCATAGAGCAGTTGATATTTGCACGTTATTGGATTTTTCAGGGTAAAGTCCTCCATTTTGAAAATGCAGTGAAGGGCTCTCAACAATCAGTTTTGTTTTGTTTTTTTTCTTTCAGCAACTTAAATAATCTGCACAGTATATGGTCCCTGGCTTTTTTCTGTTCAATTTCTGAGCTAACAAGTATGAAGTAATTTTTTTTAACTGCAGAGAAAACTTTGGGTTAAGTATTGTGCAGAAAATTAAAAGGACAATGTCAGGCCTTGTAGCCAGCTTTGTTTATCCCTCAACAGGAGAAAAACGTCTTTATTATTGTCCCTTCACCATTTTAAATGTGTACAAATGTTTATAAAGTCATTAAGGTGTGGATCCAAAGGGGGTTGGGATGGTTGCTTACTGGTGTGACTAACTACCCTTCCCCCAACCTTTTGGGAAGACGTAGTAGTCTTATTAACTAAAAATATCATGTGTATGCTTTTGTGGGAGAAAAACATAGGTTTGGTATGCTAAGTGTTTTAATAAATGGAAAGCTTTTAAAAACGTTTATGCAAAAATGGCTGCCAAAAAAATATTTCTCTTTAAATGTGAGAAAATGCTAGCCTCAATATTTTAATTTGTCCTCACTCACAAGCATAGTGAAACTAAATAGTACGAACATTAAGCGCGATATCTTGGCTGCCATTTTTGCATTGGGTCCATTGATTGTCATGAGAAGTTAACATATTGCCTTATTGTGGCAACCTCTTGAGACATCAATAATAATGTCTGGCTGATTAATTAGTAGTCTCTTCTttgggcacttgttatttgtcacaactgtgtggctgaattggccatttcagaaatagaacatgtcagttctgctgaactgagaactgcctctggcaaaaatgcccctgctttgcaagaatgaccagttGGGTCCTAAGCAGCTGTCTTGTTTGAGTATTACCTTCACATTACATTAATTTTAGGTActggtccaagtttctcaaagcagataattttatatggttagcgttaaccagcatttactaccatagaaacacatagagtgttttcattcatatgatccgtgagcatcttttacaaacacaaacaaaacaaaagaaagcctttgcatacgaatagatttcaattcctgtaggattagtagcggacaccaacaaggctgccgttcctttgttcagggacaccaactttgctgtcatgaggtaacatcaaaacatgctctaagttttgatatttctaaacaaatggttagcgctaaccatgcttcgagcaactggcgtctgGCTAACAAATTCTGAAAAATGGTTAGCAACCTTGGCCATTATCCTGGATGTAGCAGTGCTCATCCCAACAGAAATTGATTGCTATTTCATTTTTAAAACGGCAGACTTCACTGTGAAGGTTATATTTTAGTAAAATTAATAAAAAATTTCAGATTACTTCATGTTAGGAAATATGTTTTATTGTAATTATTGAAATTTGCGGTTCAAATGCTTTCTTAAATCTGCTCAATACATTCTTATAGTACCAAGAAAGTAAAATTAAAAGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULC3	Ras-related protein Rab-23 OS=Homo sapiens OX=9606 GN=RAB23 PE=1 SV=1
P35288	Ras-related protein Rab-23 OS=Mus musculus OX=10090 GN=Rab23 PE=1 SV=2
Q9DD03	Ras-related protein Rab-13 OS=Mus musculus OX=10090 GN=Rab13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR050227 all species →	Family	Ras-related protein Rab	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977 all species →	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06234	RAB23; Ras-related protein Rab-23	-	GTP-binding proteins	ko04031	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.