Gene detail

Detailed information of amic_s0152.g6.t1 in Acropora microphthalma

Genomic Location: sc0000152_pilon:120434...126665
NR annotation: XP_029191443.2, LOW QUALITY PROTEIN: ribonucleases P/MRP protein subunit POP1-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0152.g6.t1

ATGGTGGAAGCTCTGAAGGCGGCCGACAGATCCAGCGGCAAACGATTGTTCCAAACACTTCCAAGGCACATGAGGAGAAGATCTGTGAGCTTCAATTTGAAAAGAATGCCTGTTCGACTTCGATACAGAGCATCGTTGGAGATGAACAATGCTACCCCATCTGGTGAAGCCACAAAGAAGAAAAGTAGGCGCACCCGACGTAAGCCAAGAAATTTGCTTGAAGAGTATAATCGTCGACAGCGTAAGCATGTTTGGTTAGAGACCCATATTTGGCATGCCAAGAGAATGAAAATGGTTGATGCTTGGGGTTACAGGCTGGCTGATCATCCAACTGACAAAGGGTTTAGAGCATGCTACAGAGCCATGAAGAACCACTGCTTTTTACAGGACATTTCTTATTATGGTTGTATTGAAGTTTGTGGGGCTCAGGGCAAAATCATTCAAGCTATGAATCATTTGACCAATCAAGATGCAGGGCTAACAGTAGGCGCCAAATGCTACTTAAATGGTACACGACAGGGACACGTTGTATTGTACCAACCAGGACAGTACCCCCATGGAGCCCTTGCCCCTGTTTCCTTTCTTTGGAGACAACAAAAAACAGCAGAAACTTGTACCTCGACTGATACAGAGAGAGAACAACAAAATGCTGATAACTGCTCGGCCACAACAAAGCCGAATGCAAAGACCAATCAAGAAGTTGGTAAAGGAGGTGAGAATTCTCAACTCTGGGTCTGGGCTCACCCTGCTGGCTTCCAGTTAGTCTTTGATGCTATCGCTGAAGCTTGTAGTCATGTTGGAAAGACATCAGTGACAAGGGATTGTAAACTTATTGTCGCGTCGAAAAGTGATGCAGTTGATAAGGCAGATGTATCTGAGTGTCATGGAGAGGGCAACCTGCAAAATCCAACGGCTGGCGGCATTGAACAGGTTGAGTTATCCGTTGCTTCCCGAAGATTTGATTTGGTGAGGTTTCGTCTCACAGGTCCTCAATCACATGCTCTTCTTGCGAGCACTTTTACCGTGTCGGCAAAAGTTGACCCCTCTGACAAAGTAAACGAGAAGTCCTCAAAACGCCGTCGAGGGAAAAAGGACAAAAGTAAACCGTCTTCCTCCAATTGGTGGTGTGATGACAAGGTTGGAGCCGCAAATGCATTGTGGGAAAACTTAAGGCAGGTCAGCTCTCCCTCAGTCCTCCCTCGTGAGTGTGTTATTGGCCTCACTGTGTTGGATCCTCGTCTCGACCTGCCTTTGAAGAAAATGAGCGTTTCGGAAGCAACGGAAGCAGATAATTCTGAAAAAGAAATCAGCCACCTGGATGTACCTGAAATGATGACAACTCAGGAATCATTTTTAGATATCTTGACCAACTGGCCAACAAATGTTGCAGGTTCGCTTGTCTGGGATGAGCAAGTTCGCCGCAAAGTAAAAGAAACCAAAATCACAGAACACGAGTTGAACCGAAAGAGGTCTGAGCTCCTGTTGCCAGGCTCTCGACTGACGTTGAGTGAGAACGAGACATCCCATATCCCCTTGCTGCTAGTTCAGCAGTCTGGGTGCCTTGCCCGTGGTGGATATGGCGTCGTCATTCCTGGATTCGGGAGTGGTTGGGACATCATTATGCCGTCGGGGTGGGCCATGTCTTTTTGGGTGGCTCTTGTCTACCGAGGGGCGAGAACGGGCGGTCTACAGGAGGCTCAAACTATAGCTCTTGAGCAAGGGGTTCCTTTCTTTCCAAATGACTTTCCAGATACCCCAGCGGGTGAGGAGTACCTTGCTAAGATAAAGAAAGATGGTGAGGCCGAGTACAAGAAACGCCCGCCTGCGAAAAGGCCGAACTATAGCAAATTAGGCAACGAATTTCCCTTCAGTCCACCTTGGAAACTGCTTGTTGAGGAGTGGAGCTCCACTGAACTTGAGTCTAGTAAAAAGCGTAAAAATACGAAGCACAGAACTGAAGCCAATACTACTAGTCACTCTCACTCGGCCAATGTTGTGGAGAATGAATCCTCTCAGGTAGCCGGCCCCGTGGTGTCGTCCCAAGCTCTTTGCGTTTTAAGATCACTCTCAAATCTTACAATTTTACGTAACTGTGCTACGCGATATCAACAGAAGGGAGGTGGGAAACAGCACAGAATGAATGACAAACTTCGTGAATCGTCGGACGATGCGGAATTAACGTCCATGGTGAAAAGCAACCCGAACACTCTTGTTTTTGTGTTTTTGCGCATGGTCGGCCGAAGTGTTCCCGAATCCAATTCCGCGGTAGCGATTCCGTCAGATGAGGACAACTCAGCATTTGAGGCAAGCAATACTTTTGCCGGACCTGTTGAACCGCGGCACACGTGCTCAAATGCTAAGTCTCGCAAGACTTTAAGGAATTCATGCACAAGAGAAATTATGGGGTTTGTTTCTTCTGGCCATTACTCTCTTTCCCGTGGTTATGGGGTTGGAGTAGCATTTTGTACTCTACCTGGTCTGGTTAAATTATTGTCGTGTTCCCGTTCCAAAGCAGGTCCCGTTGTGTTGGTGCGAAGTTCTGGTACTCAACAATACAGATTCGCGTTTTTGAGCATATTGTGA

Transcript

amic_s0152.g6.t1

CAAGATGGCGTCCGGAGATTCTTCGAGAAATGTAGCTGATAGCAAGGCTGGTCGAAAAAGAAAAAGGCCCTGCATTCCTGGATTCACATCGTCGGTAAAGTCTACGCCTTCTATTTTTTCGCAAGCACCAAGAGGAATTAATGTCGCCGAGTTCGCCGAAGCCCGAGCTCTGGAAATTAGCAACATGGTGGAAGCTCTGAAGGCGGCCGACAGATCCAGCGGCAAACGATTGTTCCAAACACTTCCAAGGCACATGAGGAGAAGATCTGTGAGCTTCAATTTGAAAAGAATGCCTGTTCGACTTCGATACAGAGCATCGTTGGAGATGAACAATGCTACCCCATCTGGTGAAGCCACAAAGAAGAAAAGTAGGCGCACCCGACGTAAGCCAAGAAATTTGCTTGAAGAGTATAATCGTCGACAGCGTAAGCATGTTTGGTTAGAGACCCATATTTGGCATGCCAAGAGAATGAAAATGGTTGATGCTTGGGGTTACAGGCTGGCTGATCATCCAACTGACAAAGGGTTTAGAGCATGCTACAGAGCCATGAAGAACCACTGCTTTTTACAGGACATTTCTTATTATGGTTGTATTGAAGTTTGTGGGGCTCAGGGCAAAATCATTCAAGCTATGAATCATTTGACCAATCAAGATGCAGGGCTAACAGTAGGCGCCAAATGCTACTTAAATGGTACACGACAGGGACACGTTGTATTGTACCAACCAGGACAGTACCCCCATGGAGCCCTTGCCCCTGTTTCCTTTCTTTGGAGACAACAAAAAACAGCAGAAACTTGTACCTCGACTGATACAGAGAGAGAACAACAAAATGCTGATAACTGCTCGGCCACAACAAAGCCGAATGCAAAGACCAATCAAGAAGTTGGTAAAGGAGGTGAGAATTCTCAACTCTGGGTCTGGGCTCACCCTGCTGGCTTCCAGTTAGTCTTTGATGCTATCGCTGAAGCTTGTAGTCATGTTGGAAAGACATCAGTGACAAGGGATTGTAAACTTATTGTCGCGTCGAAAAGTGATGCAGTTGATAAGGCAGATGTATCTGAGTGTCATGGAGAGGGCAACCTGCAAAATCCAACGGCTGGCGGCATTGAACAGGTTGAGTTATCCGTTGCTTCCCGAAGATTTGATTTGGTGAGGTTTCGTCTCACAGGTCCTCAATCACATGCTCTTCTTGCGAGCACTTTTACCGTGTCGGCAAAAGTTGACCCCTCTGACAAAGTAAACGAGAAGTCCTCAAAACGCCGTCGAGGGAAAAAGGACAAAAGTAAACCGTCTTCCTCCAATTGGTGGTGTGATGACAAGGTTGGAGCCGCAAATGCATTGTGGGAAAACTTAAGGCAGGTCAGCTCTCCCTCAGTCCTCCCTCGTGAGTGTGTTATTGGCCTCACTGTGTTGGATCCTCGTCTCGACCTGCCTTTGAAGAAAATGAGCGTTTCGGAAGCAACGGAAGCAGATAATTCTGAAAAAGAAATCAGCCACCTGGATGTACCTGAAATGATGACAACTCAGGAATCATTTTTAGATATCTTGACCAACTGGCCAACAAATGTTGCAGGTTCGCTTGTCTGGGATGAGCAAGTTCGCCGCAAAGTAAAAGAAACCAAAATCACAGAACACGAGTTGAACCGAAAGAGGTCTGAGCTCCTGTTGCCAGGCTCTCGACTGACGTTGAGTGAGAACGAGACATCCCATATCCCCTTGCTGCTAGTTCAGCAGTCTGGGTGCCTTGCCCGTGGTGGATATGGCGTCGTCATTCCTGGATTCGGGAGTGGTTGGGACATCATTATGCCGTCGGGGTGGGCCATGTCTTTTTGGGTGGCTCTTGTCTACCGAGGGGCGAGAACGGGCGGTCTACAGGAGGCTCAAACTATAGCTCTTGAGCAAGGGGTTCCTTTCTTTCCAAATGACTTTCCAGATACCCCAGCGGGTGAGGAGTACCTTGCTAAGATAAAGAAAGATGGTGAGGCCGAGTACAAGAAACGCCCGCCTGCGAAAAGGCCGAACTATAGCAAATTAGGCAACGAATTTCCCTTCAGTCCACCTTGGAAACTGCTTGTTGAGGAGTGGAGCTCCACTGAACTTGAGTCTAGTAAAAAGCGTAAAAATACGAAGCACAGAACTGAAGCCAATACTACTAGTCACTCTCACTCGGCCAATGTTGTGGAGAATGAATCCTCTCAGGTAGCCGGCCCCGTGGTGTCGTCCCAAGCTCTTTGCGTTTTAAGATCACTCTCAAATCTTACAATTTTACGTAACTGTGCTACGCGATATCAACAGAAGGGAGGTGGGAAACAGCACAGAATGAATGACAAACTTCGTGAATCGTCGGACGATGCGGAATTAACGTCCATGGTGAAAAGCAACCCGAACACTCTTGTTTTTGTGTTTTTGCGCATGGTCGGCCGAAGTGTTCCCGAATCCAATTCCGCGGTAGCGATTCCGTCAGATGAGGACAACTCAGCATTTGAGGCAAGCAATACTTTTGCCGGACCTGTTGAACCGCGGCACACGTGCTCAAATGCTAAGTCTCGCAAGACTTTAAGGAATTCATGCACAAGAGAAATTATGGGGTTTGTTTCTTCTGGCCATTACTCTCTTTCCCGTGGTTATGGGGTTGGAGTAGCATTTTGTACTCTACCTGGTCTGGTTAAATTATTGTCGTGTTCCCGTTCCAAAGCAGGTCCCGTTGTGTTGGTGCGAAGTTCTGGTACTCAACAATACAGATTCGCGTTTTTGAGCATATTGTGATAGGCACAAAAAACTGTGCAGAGAAAATAGATTTGCCATAACTTTATTCTCGATTTTCTGGTTAACCCTTCTCTCTCAGCGTTATCTATTTTGAAGGCGTCAAACTGATCAACAAAAGAGGAAAGAAATAGAACGAATTGCT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99575	Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens OX=9606 GN=POP1 PE=1 SV=2
Q11188	Ribonucleases P/MRP protein subunit popl-1 OS=Caenorhabditis elegans OX=6239 GN=popl-1 PE=3 SV=2
Q9UTA4	Ribonucleases P/MRP protein subunit pop1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pop1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005379 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08170 all species →	POPLD	POPLD (NUC188) domain	Domain	Interproscan
PF06978 all species →	POP1_N	Ribonucleases P/MRP protein subunit POP1, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012590 all species →	Domain	POPLD domain	Interproscan
IPR009723 all species →	Domain	Pop1, N-terminal	Interproscan
IPR039182 all species →	Family	Ribonucleases P/MRP protein subunit Pop1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22731 all species →	RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000172 all species →	Cellular Component	ribonuclease MRP complex	Interproscan
GO:0001682 all species →	Biological Process	tRNA 5'-leader removal	Interproscan
GO:0005655 all species →	Cellular Component	nucleolar ribonuclease P complex	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01164	POP1; ribonuclease P/MRP protein subunit POP1	EC:3.1.26.5	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.