Gene detail

Detailed information of amic_s0153.g15.t1 in Acropora microphthalma

Genomic Location: sc0000153_pilon:302744...343875
NR annotation: XP_029203590.2, UBX domain-containing protein 7-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0153.g15.t1

CTATGACATTTTTAATGAACAAATTAGTTATTTCCGAAGTTTTCCCATCACTTTTCAAATCCCTCTCTGAACAAGGATCATCAATATTTTTTTAGATACCCCTCCCTACTTAAAGCTTTTTCCCGGGCTCATCTGGGTTTCGTGGATTCCAAAATGGCGACCAAGCCGAAGATACCTGCTAGTTTAGTTGATCAGTTTGTGAATGTCACGGGTGCTTCTAAAGCGATCGCAAAGTCCCTGTTGGAGGCTTGCAATGGAAACTTGGAAATGGCGGTGGAAATGCATCTGGATTCATGCGAAGACCCTCAAACTCAAGCAACAAGTTCACATGCTGAGGCGGCAAATGGTTCGAATGCAGCTGGTTTCGCCAGTCGTGCTACCGACGATGTCAGAGCACCTATTCCACAGACAAGAGGGATTTTAGTGGAACCATTTCAAGCTTATCCAACGAGAAGGCGTCAAGCTAAATCCGTATTTGATGCTTTCAGAGATTTCCAAGCAGAAGCAAGACAACAGGAGGCAGGAGAAAATCAGTCAATCCCTAGAGGAAAGAAAAAGACACTGCATGATTTATTCCGACCACCGATAGACTTGCTACATAAAGGAACATTTGACACTGCTAAGATTGATGGACAAGAACGCAGCAAATGGCTTCTGGTAAATGTTCAAGATGTTAGAGAATTTCCATGCCAACAATTGAACAGAGATGTCTGGAGTAATGATTCTGTGCGCAGTATTATCAAAGAAAACTTTGTCCTCTGGCAGGTCTACAGAGACAGCAATGAAGGAGAGAGGTTTATTCAGTTTTATCATGTGACATATTATCCATATTTAGCTGTGCTGGACCCAAGAACAGGGGAGAAGATGGTCGAGTGGGGATTTATGGGTGCTCAAGCATTCTGTGAATGTGCTACTGCGTTTATTCTGGAGCATCCGTCTCTTGAAGGAGAAACACCACCCGCCAAGAAAAGACGAAGTGAGTCCATAGTAGATGCCTCAGAAGATTCGCAGTTGCGCGCGGCCATCGCTGCTTCCCTGGCCTGCACAAGTTCTTCGGCAAAACAAATCGATTCCAGCAGCGAAGATGACGATTTTGCAGATCTGGAATTCAGTGATTCAGACTCCGATGTAACGAACCCTTCGCCAAAAAAGAACGCGAGCAAACAGAACACAACTACCGAAAACAAGAAAGATTTGAACTCTGAAACGACGAAAGACAATTGTCAGAATGAATCTAGTCAAGCGCAAAAGGAACATTTGAAAACAAACCATTCTACAACGAATGAAAACAGCGGCAAATTGCCGTCGAAATGTAGCTCGAAAGAAGAAGCCGAGGCACAAACCAGTGAAGGAGATTCAAAGGCAACAGAGAACGCGGAATCATCGAATGAAAGGAAACAGGAACAGGCGGGTCCGATGTGTAAAATCATGGTACGATTTCCCAATGGCTCTCGAAGTCATCTTTCTCTGAGCGCGGAAGCATCGGTAAAGGATCTTGTCCTGATGGTTCAAAAGGATGGATATCCCAACGAGCGATTCGAACTTGTTACTAATTTTCCTAGAAGGAAACTCACGTCTTTGGATTTCAGTACAACTTTAAAGTCTGCGGGATTATTCCCTCAAGAGACTGTGTTTGTTCAGGAAAGATGACACCGTCGAGATAAACGTAGAGAGGTCAACGAACTGTGCCGAAGATCTCGCAAATCTTCCTGGGAAATACCGAGTTTTGTGAAAGGCCTACGAACGGTGCCGAAGAAGCTAACGGACACACCCGAAAATGTTGAATTTTGTTTTACAAGCATTGGCCTGTCTACGAATATAGTTACGAAGATCTTACGGACGTTCACGAGAAGTGCGGAGTATCTTTCGATGTTAGCAAAATACAGGCCACCCAAGGTTCACTGTTTAGATTTTCGTTTACCCTTACCCTGAGCTGCGCTGGAAATAATGGTCATAGGTCCTTCAAATATCTTCGCTTCGGTCGTATTCAATTCTTCAGACATTTCGATTTTCGGTAAGCATGTCCCTCCATCGAGGACACTGTCAGATGACCAACTGTTATTTTCAGCAATGCTTTAGATTAATTACGAAAGAATATTAAGAAGAGAATAAATTATTTTTCCACTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94888	UBX domain-containing protein 7 OS=Homo sapiens OX=9606 GN=UBXN7 PE=1 SV=2
Q5REY7	UBX domain-containing protein 7 OS=Pongo abelii OX=9601 GN=UBXN7 PE=2 SV=2
Q6P5G6	UBX domain-containing protein 7 OS=Mus musculus OX=10090 GN=Ubxn7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006691 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|UBA · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13899 all species →	Thioredoxin_7	Thioredoxin-like	Domain	Interproscan
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan
PF00789 all species →	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050730 all species →	Family	UBX domain-containing protein	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR017346 all species →	Family	UBX domain-containing protein 2/7	Interproscan
IPR006577 all species →	Domain	UAS	Interproscan
IPR001012 all species →	Domain	UBX domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322 all species →	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24350	UBXN7; UBX domain-containing protein 7	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.