Detailed information of amic_s0154.g38.t1 in Acropora microphthalma

Genomic Location: sc0000154_pilon:553416...577954
NR annotation: XP_044176312.1, protocadherin Fat 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q14517Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2
Q5F226Protocadherin Fat 2 OS=Mus musculus OX=10090 GN=Fat2 PE=1 SV=1
O88277Protocadherin Fat 2 OS=Rattus norvegicus OX=10116 GN=Fat2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003981 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028
all species →
CadherinCadherin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015919
all species →
Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR020894
all species →
Conserved_siteCadherin conserved siteInterproscan
IPR002126
all species →
DomainCadherin-likeInterproscan
IPR039808
all species →
FamilyCadherinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24027
all species →
CADHERIN-23Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →
Molecular Functioncalcium ion bindingInterproscan
GO:0016020
all species →
Cellular ComponentmembraneInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0007155
all species →
Biological Processcell adhesionInterproscan
GO:0007156
all species →
Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0000902
all species →
Biological Processcell morphogenesisInterproscan
GO:0005912
all species →
Cellular Componentadherens junctionInterproscan
GO:0007043
all species →
Biological Processcell-cell junction assemblyInterproscan
GO:0007275
all species →
Biological Processmulticellular organism developmentInterproscan
GO:0016339
all species →
Biological Processcalcium-dependent cell-cell adhesion via plasma membrane cell adhesion moleculesInterproscan
GO:0016342
all species →
Cellular Componentcatenin complexInterproscan
GO:0034332
all species →
Biological Processadherens junction organizationInterproscan
GO:0044331
all species →
Biological Processcell-cell adhesion mediated by cadherinInterproscan
GO:0045296
all species →
Molecular Functioncadherin bindingInterproscan
GO:0098609
all species →
Biological Processcell-cell adhesionInterproscan
GO:0098742
all species →
Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0154.g38.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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