Gene detail

Detailed information of amic_s0154.g70.t2 in Acropora microphthalma

Genomic Location: sc0000154_pilon:1130255...1150453
NR annotation: XP_029179668.2, advillin-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0154.g70.t2

ATGGGAGTTGATGAGGCTTTTCTTGAGGCCGGTAAGAAACCTGGCATGGAAATATGGAGAATTGAGAAACTCAAAGTTGTGGCTCAAGACGTGAAGACATATGGTTCATTTTACTCAGGAGATTCCTACATTTGTTTGAATACGAGAAAAGTGGAATCACATTTAGAATGGGACATTCATTTCTGGCTTGGCACCACCACCTCTCAGAATCAAATCACATCTTTTTGTAATCAGGACGAGCAAGGTGTTGCAGCTTACAAGACAGTGGAACTAGATGACCATCTAGGGGGAGGACCAGTGCAATATCGAGAGGTTCAAGATCACGAATCGAGAAAATTTTTATCGTATTTTCCGAAGGGAATAAGATACCTGGAAGGTGGCATCGAGTCGGGTTTCAAAAAAGTACAGAGAGGTGTTTATGAGAAAAGACTTTTCCACGTCAAAGGCAAAAGAAATGTGCGTGTGTCACAGGTCGAGCTTCATTACTCGTCGCTCAATAAAGGGGATGTCTTTATTCTAGACGAAGGTATGACAATCCACTGCTGGAATGGATCCCAATGCAGTAGAACGGAACGAATGAAGGATTGCTTTATCCTGGACTGTGGCAGCAGTGGTATATTTGTGTGGGTTGGTAAAAAATGCACAGACGCTGAAAAGAAAGCAGGGATGAAGAATGGAATGGAATTCATCAACAAGAAAGGGTACCCCAATTGGACACAAGTGACCCGTGTGGTGGAGGGAGGAGAGACGCCAATATTTAAACAGTTTTTCTCGGGCTGGAGGGACGAAGGTGAACAAGTAGGCCTCGGAAAAGTGTTCCGTCAAGGAGCTTTGGCTAAACAGAGCAACGAGAAGTTCGATGCTACTCAATTGCACGACCAACAAAAAAGAGAACACAAAACAGAAATCCTCCCTGATGATGGAACTGGTGATGTCGAGATCTGGCGAGTTGAGGATCGCGACCTAGTGCTCTGGGAACCAAATTTACATGGCGTATTTTTTAGTGGCGACTCTTACGTACTCAAATACAATTACATTAGCAACTGGAGGCGAAGGATAATCATTTACTTTTGGCAGGGAGGGAAGAGCAGCATTGATGAACGGGCCGCGGCAGCCATATTGGCGGATCAAATGGACAAGCAGCTTGGAGGCATTGCAACACAGGTTCGAGTGGTGCAAAATAAAGAGCCGGAGCACTTTTTGAGGATGTTTCGAGGGCGTTTCATTATTCTGGAGGGTGGTAAAGGAGCTGGGTTTCGTGCAGGATCTGAGGATGACTCTTATGATAGCGAAGGCAAAAGAATGTTTCACGTGCGCGGCTCATCTGAAATGAGTGCCAAAGCCATTCAGGTGCCTCGGAGAGCGGCTTCGCTTAACTCAGGGGACATGTTTGTCTTGGAAACGCCATTCATCGCCTACTTGTGGAGAGGGAGGGACGCAGGCGCGGCCGAAAGGAGAAACGCCAGACAGCTTATTGATTACCTGATGATTGGCAGGGAGGTTGAGCCGATGAGGGAAGGCAAGGAACCGCGAGAGTTCTGGGATGCCATTGGTGGCTTCGAAGAATATGCAACAGGGAAGAGTGTCGAGAATGAGAGACCGAGCTACCCGCCACGTTTATTCCAGTGTTCCAATGCTTCCGGAGCTTTTCAAGTGGAAGAAATCTTTGACTTTTCACAAGAGGACCTCGTAGAGGATGATGTTATGTTCTTGGATACTTATGATGAGGTGTTTGTTTGGATTGGCGATGGCGCAAATGAAGTCGAGAAATCCGATAGTGTAACAGTTGCAATGGATTATGTGCGGTCTGACCCCACTGGTCGAACCCTGGAAGACACGATGATCATTCAAGTGAAACAGGGCTACGAACCCTTAAATTTCACGGGACATTTTCATGGCTGGGACAGAGATAAATGGAGCGAAGGAAAGACCTATGAAGAAATGAAAAGAGAATTGGGCGATGATGACAGTAGAAAAGTGTCTGAAATAAGAATAAATCCGAAGATTTCCAACGTCATAAATCACAACAATAACAATAACGGCTTCACTGAAGTGGATGGTTTGTGCTTTTCATACGAAGTTCTCAGCCAACCGCCTCATCTACTTCCCGCGGGCATCGATAAAACTAAGAGAGAGAGCTACCTCTCAAAGAAGGAGTTTTTCACGGTATTCGACATAGAGAGAAGTGAATTTGATTCTCTGCCTAGGTGGAAACAAGTTCAACTTAAAAAGGAAAAAGGGCTGTTTTGA

Transcript

amic_s0154.g70.t2

CGCCGTGACGTGTCGCACTTGGTCCGTTTTGTCAATCGTCACTTTGTGTACTTTCCGTATATCTGATTGGCTAAAGCAGGTTTGACCAAAATCTTTCAGCCGCCGTTGCTAACGTCGATTTATCGATAACAAATATGAAATGCACGTGCGAAATGTAACTCGACGCAGATCTGGACCCCCCCGAACACTTCCAAATACATTCTAAAACTTCCCCCAATACATTCTAAAACGGAAAAGTCATAGTAAAGCTACAATTTAAGAATATATCAAGTATATTTTCTGCCTGAAATCGGAAGAGAAATAATATTCAGCATGGACCGGAAAAACAACATTGTCGCGGATGAAAAAGAAAAGAGGTCCATGACTCGGCAAGGTAACCTTTCCTACTAAGAAAACGTTAGTTTTTGAACACCTGTTGTATTTAAAATTAACGGCGTCCTCTAAAATATTCATTACCGCAAATGAAGACTGAATAGTACTAAAATTTATGCAATGTGCTCACAAGATGAACGACAAATTCCCTCAAACAAGGAAAGGACCGCTTGCCAAGTAATAATGACTTGTGTCGAGGCAAGCCTCCAATAGGAGCTGCTTGTCTAGCCGTAATTTTAATTTACCAGCTCCTTAAACAGCAATTTAAATTTCTGTCCGAAATAAATGTATTTTGAATTCGTTTCTCTGACAACGCACAAATTAAATGCAGAAAGCAATATTTTGAGACCCAACTTGTTGTCTCCAGTCAAGTTCCAACGATAGAAACGACAGATACCTTATATTGCGAGAATTCATTTTATTTTCGCAAATGGGAGTTGATGAGGCTTTTCTTGAGGCCGGTAAGAAACCTGGCATGGAAATATGGAGAATTGAGAAACTCAAAGTTGTGGCTCAAGACGTGAAGACATATGGTTCATTTTACTCAGGAGATTCCTACATTTGTTTGAATACGAGAAAAGTGGAATCACATTTAGAATGGGACATTCATTTCTGGCTTGGCACCACCACCTCTCAGAATCAAATCACATCTTTTTGTAATCAGGACGAGCAAGGTGTTGCAGCTTACAAGACAGTGGAACTAGATGACCATCTAGGGGGAGGACCAGTGCAATATCGAGAGGTTCAAGATCACGAATCGAGAAAATTTTTATCGTATTTTCCGAAGGGAATAAGATACCTGGAAGGTGGCATCGAGTCGGGTTTCAAAAAAGTACAGAGAGGTGTTTATGAGAAAAGACTTTTCCACGTCAAAGGCAAAAGAAATGTGCGTGTGTCACAGGTCGAGCTTCATTACTCGTCGCTCAATAAAGGGGATGTCTTTATTCTAGACGAAGGTATGACAATCCACTGCTGGAATGGATCCCAATGCAGTAGAACGGAACGAATGAAGGATTGCTTTATCCTGGACTGTGGCAGCAGTGGTATATTTGTGTGGGTTGGTAAAAAATGCACAGACGCTGAAAAGAAAGCAGGGATGAAGAATGGAATGGAATTCATCAACAAGAAAGGGTACCCCAATTGGACACAAGTGACCCGTGTGGTGGAGGGAGGAGAGACGCCAATATTTAAACAGTTTTTCTCGGGCTGGAGGGACGAAGGTGAACAAGTAGGCCTCGGAAAAGTGTTCCGTCAAGGAGCTTTGGCTAAACAGAGCAACGAGAAGTTCGATGCTACTCAATTGCACGACCAACAAAAAAGAGAACACAAAACAGAAATCCTCCCTGATGATGGAACTGGTGATGTCGAGATCTGGCGAGTTGAGGATCGCGACCTAGTGCTCTGGGAACCAAATTTACATGGCGTATTTTTTAGTGGCGACTCTTACGTACTCAAATACAATTACATTAGCAACTGGAGGCGAAGGATAATCATTTACTTTTGGCAGGGAGGGAAGAGCAGCATTGATGAACGGGCCGCGGCAGCCATATTGGCGGATCAAATGGACAAGCAGCTTGGAGGCATTGCAACACAGGTTCGAGTGGTGCAAAATAAAGAGCCGGAGCACTTTTTGAGGATGTTTCGAGGGCGTTTCATTATTCTGGAGGGTGGTAAAGGAGCTGGGTTTCGTGCAGGATCTGAGGATGACTCTTATGATAGCGAAGGCAAAAGAATGTTTCACGTGCGCGGCTCATCTGAAATGAGTGCCAAAGCCATTCAGGTGCCTCGGAGAGCGGCTTCGCTTAACTCAGGGGACATGTTTGTCTTGGAAACGCCATTCATCGCCTACTTGTGGAGAGGGAGGGACGCAGGCGCGGCCGAAAGGAGAAACGCCAGACAGCTTATTGATTACCTGATGATTGGCAGGGAGGTTGAGCCGATGAGGGAAGGCAAGGAACCGCGAGAGTTCTGGGATGCCATTGGTGGCTTCGAAGAATATGCAACAGGGAAGAGTGTCGAGAATGAGAGACCGAGCTACCCGCCACGTTTATTCCAGTGTTCCAATGCTTCCGGAGCTTTTCAAGTGGAAGAAATCTTTGACTTTTCACAAGAGGACCTCGTAGAGGATGATGTTATGTTCTTGGATACTTATGATGAGGTGTTTGTTTGGATTGGCGATGGCGCAAATGAAGTCGAGAAATCCGATAGTGTAACAGTTGCAATGGATTATGTGCGGTCTGACCCCACTGGTCGAACCCTGGAAGACACGATGATCATTCAAGTGAAACAGGGCTACGAACCCTTAAATTTCACGGGACATTTTCATGGCTGGGACAGAGATAAATGGAGCGAAGGAAAGACCTATGAAGAAATGAAAAGAGAATTGGGCGATGATGACAGTAGAAAAGTGTCTGAAATAAGAATAAATCCGAAGATTTCCAACGTCATAAATCACAACAATAACAATAACGGCTTCACTGAAGTGGATGGTTTGTGCTTTTCATACGAAGTTCTCAGCCAACCGCCTCATCTACTTCCCGCGGGCATCGATAAAACTAAGAGAGAGAGCTACCTCTCAAAGAAGGAGTTTTTCACGGTATTCGACATAGAGAGAAGTGAATTTGATTCTCTGCCTAGGTGGAAACAAGTTCAACTTAAAAAGGAAAAAGGGCTGTTTTGATTCATTCAAGAAAAGTTCGTCATTTCTGAAAGTACTGGGAAACAGGTTTGCCAGGGCAGCACTCAAAAAAAGCCGTGTATTCGCGAACAGCTGCTCCTTTGTGACATCGCGAAACTGTATAGAAAGTTTACAACTGACCTCGATCGAGATAACTGAACTGAAATGTGTCGCTAAGGAACAACTTTGTTTTGTGACAAGTTACGAACCATTAATTTGTTTTCAGAAATGTACTCTATATCTTTGGAGCAATTTCAAATGAATTTTACGAGTGAGTAATAAACACGGAGCACTATAATAATTTTACTTTGTATACAAgtttcagagatcgcttactatttatatcattagggagttttagcaataatgacggagccggcaagaaaagcgtcacttgaaaataaacacttgcgcaaccgactgagactattttgcgattatccaatcttgttcgcattttacaatgttaattagtctgagcactgtcaaaggaaatacacaaactaaaggttaacggttgtatgctaaagtgttcatcaAaaTggtaaatgtggtaatttgacAttgttgttttgcagaggacggcagggacttAttcataagagcgtgccgcacgtgcagcAcgattatttttccacactcgaccaatcaaattGctaatttatgAcgttgtcgtTgccgttcccgtcgttgatActaaaactccctaTTTGCAAgaaccttgaattaAGTCTTTCTGAACGAGCGCATGCGCAACTGTAAAATATGTACCGTACGACGTAACGTACCGTACCAAGACTCGAACGCATCACATGGTGAAATTTCCTAAAACACTGCTGTGTATATATGGACATTGTTACTGATTATAAATTGAACTGAGTGGATGAAAGGGATCTGTCACATATGGTCTAGGGACCGACACTTCTCTCCCTCACTGCCTGGCGACGGGTATCTGAAACTTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88398	Advillin OS=Mus musculus OX=10090 GN=Avil PE=1 SV=2
Q9WU06	Advillin OS=Rattus norvegicus OX=10116 GN=Avil PE=2 SV=2
O75366	Advillin OS=Homo sapiens OX=9606 GN=AVIL PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001445 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02209 all species →	VHP	Villin headpiece domain	Domain	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR003128 all species →	Domain	Villin headpiece	Interproscan
IPR007122 all species →	Family	Villin/Gelsolin	Interproscan
IPR036886 all species →	Homologous_superfamily	Villin headpiece domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11977 all species →	VILLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005546 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008154 all species →	Biological Process	actin polymerization or depolymerization	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0051014 all species →	Biological Process	actin filament severing	Interproscan
GO:0051016 all species →	Biological Process	barbed-end actin filament capping	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08017	AVIL; advillin	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.