Genomic Location: sc0000156_pilon:671464...681256
NR annotation: XP_029213265.2, histone H2A deubiquitinase MYSM1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families
| CDS |
| amic_s0156.g49.t1 |
| Transcript |
| amic_s0156.g49.t1 |
| Protein |
| amic_s0156.g49.t1 |
| UniProt accession | Description |
|---|---|
| Q5F3F2 | Histone H2A deubiquitinase MYSM1 OS=Gallus gallus OX=9031 GN=MYSM1 PE=2 SV=1 |
| Q5VVJ2 | Deubiquitinase MYSM1 OS=Homo sapiens OX=9606 GN=MYSM1 PE=1 SV=1 |
| Q5RGA4 | Histone H2A deubiquitinase MYSM1 OS=Danio rerio OX=7955 GN=mysm1 PE=2 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008517 (this species only) · gene tree & orthology |
| Transcription factor family | MYB · all TF in this species |
| Ubiquitin family | UBD|Other|Jab_MPN · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00249 all species → | Myb_DNA-binding | Myb-like DNA-binding domain | Domain | Interproscan |
| PF04433 all species → | SWIRM | SWIRM domain | Domain | Interproscan |
| PF01398 all species → | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| IPR007526 all species → | Domain | SWIRM domain | Interproscan |
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR037518 all species → | Domain | MPN domain | Interproscan |
| IPR050242 all species → | Family | JAMM/MPN+ metalloenzymes, peptidase M67A | Interproscan |
| IPR000555 all species → | Domain | JAB1/MPN/MOV34 metalloenzyme domain | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR017930 all species → | Domain | Myb domain | Interproscan |
| IPR017884 all species → | Domain | SANT domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10410 all species → | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0008237 all species → | Molecular Function | metallopeptidase activity | Interproscan |
| GO:0008233 all species → | Molecular Function | peptidase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11865 | MYSM1; histone H2A deubiquitinase | EC:3.4.19.- | Ubiquitin system | ko04121 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |