Gene detail

Detailed information of amic_s0157.g2.t1 in Acropora microphthalma

Genomic Location: sc0000157_pilon:8836...40195
NR annotation: XP_044164184.1, carbohydrate sulfotransferase 3-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0157.g2.t1

gaacaaaaaacgacAAGATAAATGTTAAAACGCAAAAAGGAATTTGCGGGGGCATATGCACCACATGCTTAAAAGCCACAACCAAAAGATAAGATTTACATAAAAAATAATATTTTGTAAGAAATTATAAAGAATCTGAGATGACAGCATAGAGAAGCCAAGTAAATTCAAGCGACTTCGCTTGACTCTGAAGATGACAGCAGTAACATCGGTTCTTTTCAGTAGCTTACTTCATACGCGCATAATCGGATTAAAATTCAATTTAATTACATTTGTATAATTTTTTGCTTTACAGTAGGTCTCGACCTGGAAAGGAGATGACTAAAAACTACACATTGAAATTTATACTTCTCGTATTCTCCGTATGTGTGGCAATCTCTATCTGCCACTTTATGTGGTACTTTCAACATGGCAAGAAGCCGAAGAATCTAAATATGCGACTGGAAGGACTAAAGCCTACGCCACAGTATTTGAGACATACAGCGACAATGGAAATAACAAAAACAATGGCGCCGTTTACGAAGAGAGAGGATAAAGATGGCATCAAAGAAAATATCGACAAACAGCAAGCTCGGCGCAGTTTATTAATTTTTGGTCAAGATCGGACTGGAACAACATTTTTAAGCACCATGTTTGCGCAAGATCCTCAAATATTCATAGTGTATGAGCCATTATGGATTGCATTCGACTGGAAATCAGATGAGCCAAATTATAACTGTTCAGGGTGCGAAATCGAAATTGTCAATGCAATTCTTAGTTGCAACTTTTCACGGTATCCATCATCGACGAAATTCTTATCGTATGTTAAAAGAGATTGGACAGGAGCACTGCCCGTTAATATTTTCACGACCAACCATTTTTGCAACTCCAGCGGTCAAAGCAAAGTGGACTGTTCCAAGATGCGTGAAAACCCCAATTTTGTGGATCGCCTTTGCAAGGAAAACTTCAAACATAGCGTTGTGAAAGTCTCACCTGTGCGGCTTCCGCGAGAGAAACTGGCTGATCTTGTTCCGCAGGTTATACTGGAAAATCCAGGAACCGAGGTGCGGGTACTGCACCTGATCCGGGACCCGAGAGGAAATCTCAATTCCCGAATTAACATCAAATGGACGAAGGATTACCCGCATCCTATGCTTGCAAATCATGCTCGCAGACTTTGCAAAGCGTCGTTAAGTGATTTGGATCACGTGGACAAATTAAACCTCACGGGACGATACAAACGCGTGTGGTACAAACAGATCACGGACGATCCAGTAGGAACAGCAAGAGATATTTACAACTTTGCGGGATTCCAAATTCCGTCTGATGTAGAAAAATGGATAATCCGAAGCACAACACCAAACAAAAAGCAGCAGAAACAAGAACTCGAGAATCCATATTCCCCAATCTTTAATGAACGCCTCCTTATTGCAAATTGCATCACAGATTGTGAACATACACAAAACCCAAATGAGGAGCATTCCTCCAATAATGACAATGACAGGGTTGTCCCAGTGTTGCTCAATGCTACATGTGACGTCATTCTTCAGGGGGCAGTAGAAGGAAGTACCTGCTGGTCCCATCCGAGAGGAATCTTCATTCTTGGAGCCATGGTGATTGTGAACCAAGTGTTGATGGAAGAGATGACAGACGCGCCATGTCCAAGTCTGCCCAAGCCTTTGAATCTCACAAAATCAGCCAGCTACCTACGTCAACGATTGAGCCCATCCGACCCAACGGACTTAAACTTTGAACTAGACTCTAGTCTGGTCAGGAGGAGATATCAAGGTGGAAATCATGGACAAAAGACATGTTGGCATGAAATCTTCCACCGTGGAAAAGCAAGCCCTGCACAATTCCCTTACTATGCCAGGATCAGGAGAGTTTCAAAAGCTGTTGTGGTCTGTACGGATACCTCTTCAACGATAAAGAAGATGATGGCTGATGCATTCAAAGATGGGTTTCATTCCCTGGATGTGTGGCATAAAGCCAAGAGTATAAGGAAGTGTTTACTCAAGGTCAGCAATGTGAAGGAAACCAATAAAATTGCAAAGTGTTCCGAAGAATTAATTAAGCACTTCTGGTATTGCTGTGGCATCTGTTTTAAAGGATATTCCAGCGATGACGAGGCTCTTGACAAGCTAAAGGATAAATGGATTGGTCTCCTCCCTCATATACATGAATGACCCTCTGAAACATGTGAGCTGGAGGAGTTACCAGAAGAGCATGCCCTTCCTTTGTTTGACAGGCATGATAAGGATTTTCAGGCTCTCCAGAAGGTAATTCTTGAGCCCAGTTTACTGGAGAGCATGAAGTATTACATGAATAGAAGGGCTGGGCCGGACTTGAGATGAGGGAGAAAAAAAGGATATGACTAGGCAGCATCACcagtgttctccctaagttttagctcagcagGAACAAGCATTGACTGAAGAAGTTGATATCAACACCAGTAACAATGAAGACAATTTGGGTATCATTGTTGATCAGTGTTAAATTTTTTCAAAGAGTACAGTACATACAGACTGAGTCCTGCTATCCAAACTTAATGGAGAAACATTCATCTCTTATAGATGGCAACGTATATTGTTAAGAAAACCATACAACCAAAGACTAGCTCCCTTtaacaatagtaattattaaatatataattttacagcaataataataataataTTTATTGTTGTCATTTATAATTTAGCAACAACCCCAGAGTTTCAATTTAGTCTCAGATGTGCGTTGTATGATTAAAATATTTCAATATTTGTTGTGTTGGTGCTCAAGGTTAATAAACAATAATACATTATTTCAAAACCACAACAAAAAGTCAGTGACATTATGATGCTGAATTCCTCAGATCTCAAAAGACATCACATCTCCAAAAACAAACTGAAATGTTCCTTGCCATGCATAGTTTGAGCAGATTAACGCTGATAACAGGAGATGGGCATCCTTATCAACATCAATTATTAGCAATTATTAATCCTCATGAATCATTAACAACTACTGATACCAATAGACCGCACAATGAAGGTTAACACATCCGTGCATGAAATGAGAATTTATTCAGAATGAATGCTACAAAGTAATCATAGTATACGAATAGTTATTTTTCGGATTTAAAATTACCGCTAACACTGGAGTATGTGATATAGGGTTAGTCTCGATCTACAACTTAAAATATTGACAAATACCGGAGGGAAATTGCACACAAATTGGAAGCAAACAATAGGCAGGGTTGGATACGGGTCTTCTTCTTGCTGGATTTTCAGCGGTCATGGTGTATTCAACACTGAGCTATTATGTTTCAGTAAAAATCATCATCGCTGTATGCATTGCGGGCGCCGGTGCACTTCACCGAAATCATTTTCCGTAATACAGAAATTGACCTTTCAATTGTGTTTCGGATAATCGGATTGTACCTTTTCAATCTAAGGCAAGGCAATCTAAGGTTATATAAGCTGTTGCCTTAGATTGGCATGACACAATTGCAATGTCCAAAACAATCGGAACGTTCGTAATATCTGTATTCAAAGCGGACAGACTGACAGAAAATGCTTTCGGTGAAGTGCACGGCCGCAGTGCACACTGGTTGTAGGTGTCCCCTTAATTTCAGTGAAATAAATGGTTAAGATGAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9GZS9	Carbohydrate sulfotransferase 5 OS=Homo sapiens OX=9606 GN=CHST5 PE=1 SV=3
Q80WV3	Carbohydrate sulfotransferase 2 OS=Mus musculus OX=10090 GN=Chst2 PE=1 SV=3
Q9Y4C5	Carbohydrate sulfotransferase 2 OS=Homo sapiens OX=9606 GN=CHST2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001250 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00685 all species →	Sulfotransfer_1	Sulfotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000863 all species →	Domain	Sulfotransferase domain	Interproscan
IPR051135 all species →	Family	Gal/GlcNAc/GalNAc Sulfotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10704 all species →	CARBOHYDRATE SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0001517 all species →	Molecular Function	N-acetylglucosamine 6-O-sulfotransferase activity	Interproscan
GO:0006044 all species →	Biological Process	N-acetylglucosamine metabolic process	Interproscan
GO:0006790 all species →	Biological Process	sulfur compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00753	E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase	EC:2.4.1.214	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.