Detailed information of amic_s0160.g16.t1 in Acropora microphthalma

Genomic Location: sc0000160_pilon:127976...132652
NR annotation: XP_015778293.1, PREDICTED: iron-sulfur cluster assembly 1 homolog, mitochondrial-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8T3X9Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Drosophila melanogaster OX=7227 GN=MagR PE=1 SV=1
Q5ZJ74Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus OX=9031 GN=ISCA1 PE=2 SV=1
P0DN75Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Columba livia OX=8932 GN=ISCA1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006776 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01521
all species →
Fe-S_biosynIron-sulphur cluster biosynthesisFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017870
all species →
Conserved_siteFeS cluster insertion, C-terminal, conserved siteInterproscan
IPR035903
all species →
Homologous_superfamilyHesB-like domain superfamilyInterproscan
IPR050322
all species →
FamilyIron-sulfur cluster assembly and transfer HesB/IscAInterproscan
IPR000361
all species →
DomainFeS cluster biogenesisInterproscan
IPR016092
all species →
FamilyFeS cluster insertion proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10072
all species →
IRON-SULFUR CLUSTER ASSEMBLY PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan
GO:0005739
all species →
Cellular ComponentmitochondrionInterproscan
GO:0016226
all species →
Biological Processiron-sulfur cluster assemblyInterproscan
GO:0051537
all species →
Molecular Function2 iron, 2 sulfur cluster bindingInterproscan
GO:0097428
all species →
Biological Processprotein maturation by iron-sulfur cluster transferInterproscan
GO:0051536
all species →
Molecular Functioniron-sulfur cluster bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22063ISCA1; iron-sulfur cluster assembly 1-Mitochondrial biogenesisko03029deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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