Gene detail

Detailed information of amic_s0160.g17.t2 in Acropora microphthalma

Genomic Location: sc0000160_pilon:132682...144255
NR annotation: XP_044164157.1, probable ATP-dependent RNA helicase DDX4 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0160.g17.t2

GCGGCCTTTCTATTACCAGTGATGACAGGAATGCTGCAGAAAGGTTTGACCAGCAGCTCGATGATGGGAGGCCCTCAGTGTCCTCAAGCTCTAATTATCTCACCAACTCGAGAACTCGCCTGTCAGATTTACAATGAAGCTCGCAAGTTTTCATATGAAACTATTGTCAAGACAGTTGTGGTATATGGAGGTGTCAGTGTTCCGCACCAGCTGCGAAAAATAGAAATGGGATGCAATTTGCTTGTGGCAACACCAGGGCGTCTAAAGGACTTTATTGAGAGAGGAAAGATCTCTTTGGAGAAAATTCAGTATCTCATTCTGGATGAAGCAGATCGTATGCTGGACATGGGATTTGAACCCGTCATAAGACAGGTGGTAGAAAAGCTTGGAATGCCAGGGAAATGCGAGAGGCAAACTCTCATGTTCAGTGCAACATTTCCAGAAGAAATCCAGCGTCTGGCAGGGGACTTTTTAAATGACTACATTTTCATAACAGTTGGAAGAGTTGGCGGAACAACTTCTGATATTCAACAAACTGTCATGGATGTGTCGGATGAACAAAAACGTGAAAAGCTGATGGATCTACTCAGTTGCTCAGGATCAGACAGAACCCTCGTGTTTGTGGAATCAAAGCGTGGAGCTGATTTTCTTGCTAGCTTGTTATCACAAGAAGGATTTCCCACAACAAGTATCCATGGTTTAGGATCAGACAGAACCCTCGTGTTTGTGGAATCAAAGCGTGGAGCTGATTTTCTTGCTAGCTTGTTATCTCAAGAAGGATTTCCCACAACAAGTATCCATGGTGACCGTCTGCAGCAGCAAAGAGAAGAAGCTTTAGAGGATTTCAGAAGAGGGCGTTGTCCTGTACTAATTGCCACTAATGTTGCAGCTCGTGGTTTGGACATTGACAATGTTAAACATGTTGTAAACTATGATCTTCCATCAGAGATTGATGAGTTTGTACACAGGGTAGGAAGAACAGGACGTATAGGACATCAAGGAAAAGCTACAAGTTTCTTTACACGAGGGAAGGATGACAAGATTGCAAGGTCTCTTGTGAAAGTCCTCTCTGATGCTTCTCAAGAGGTCCCAGAGTGGCTTGATGAAATAGCAGAGAGTGCTGTGGGTACCAGCTATGGTCCAGCTGGTGGAAGATTTGCTTCCAGAGATACAAGAAGACAGTACGGTGGTGGCCGGGGTGGTGCCAGTGCTGGGGGCGGAGACTCAGGATGGGGGACTGAGTGGAACAGCGACAGTGTCAATTCAGAAATTAACGGCACCTCAGCTTGGTCACCAGGTGGTGGTGAGGAAGAAGAATGGTGATTTTCCATGTGACATCTTCCGTCTGAACCATTCAATGATATTTGGGTCATTGTTTGGATTTGCGTTCCAGTTATAGTTGGATTTAAAGTTAGATTATACAAGCTATCACAATTATTTTGATCATAACATTACCCTTGTTACTGAGAACTATGCCATTTCTCTTTGGAAAACGGAACATGCTGCTGGCCCAAGAATTTGTTCACCAGAAGTGtgtttttggtttgttgttgtttttgtttttTGCCTAAAGAGGAGATTGTCAAAGATGTTTTGCCTTGCTGAAGGTTTCTGTTCTAAATACTGTGAACAACTCAACAGCCTGACTAATTTGATACACTGGAAGTTGGTTGTTGTGTCAGCAGTGCCTGGTTCAAGGAAGTGACCAAAGGTTTTTGGATTTTGGTGCAAAGATACATACCATGTTCAAGTATGGATTTGACCAAAATTGAAGAGCTATCTCCACATTCATAAAGTTTGCAAGAGATGCTTTATGAAGATATGGCATTTAGTAAACAGTCTTTGTGTTGTAGATGGTGGATCTTTCATTTTAAAATCCATAGCTTTTTTAACGACCAGTGGAGGTTGCCGGAACCAGTCTTGTCTGACGATGGCAATCTTTTGTGGCATGTGTTTGTCATGATTTATGATTCTTTGCAGCCAGCTATATTGAATTGTGGCACTTTTCTGCTAAAGATCTACTTGGAGTATTATAAACAATGACAACATGCCTTTAAAATTCACCCCATGCTTACTGCACAAGCACTTAGGCAAGTTTTGGTCATTCCAAGGCTGCTATGGGAAAAGGAGATGACCTACAAGTTATTACATTGTTTCCCAGTTGAGGAACTTTCAAGGCTGGGATTGTCAAGTTGCCAATGGACATTAACAGCTGTTTTCAAGTATGCTGACCGTGGTGAACCACACATCTCATGGAGCCCTGCATGCATGTTCTGTCCTGGAAATTTGTTTGGATGTGAACAATACTCCTTATATTATTTCAAGCATGACTTTGTTTAGGCTGTTCCAGTGCCTACAATTGTTATCAGCAGGGAGCATAACAAATTTTTCCCACAAAAGAACTGAGGCATTGCATGACTTACTCACCTAAATCCACAATATGTTTATGATTTTAGATTGTGTGGTGTATATTTTCCTCTAGCCTTCATTGGGGCCCATGACAGCTAAATAATTATGGGCTCATGCCAATCTACATTGGTATGGAAAAAGAACTACGCAAAGCATTAACCAAACTGATTCATGTTCATGGATTGTGTGGTAAATGTGTTCTAGCTTCTTTGTTATTCATGGCTGTGGTTCAATCAACACTGACTAAAAAGGAAGGTATGCCACTAATGACTTACAAGACTGGTTAAGTCTACGAGTTGTGTTTATGGCAGGACATTCCTTCTGGCCTCTTTGCTATATGTGTCGTCAAGGGAATTGACTACAGCCAAACAACACTGACTTTGTGACACAATGTCACTGTTGGCCACCTATTGCATCAGGGTTTGTACAAGCTTTTCACTTCTTATTCTCTGCATGAGCCAACAGTTAAAGAAGCATCAAAATTCCAAACTTTCATGCAGAGACTGATCAGTGGAGGGACTTTTTTCTGACCTCAGAGTAATATTTAATGCCTATATAGTGGCAGTAACATTGTGGACACACTTAAGGAACAAAACACAAAATTACAAGTCCTTAACAGGCGTTTGACCCAAACACTGAGGGCTGTTTGGTTTGGACAAAATGAGGAAGAGGAGGAGTTGTTAGTAACAGTGAGTAGGCAACAGTTACTTTTTTATGAGGGCCCTGGTACTTAATATCTTTTTAGGAGTGCATCATTTGATAAAGGTTGCAATCAAAGTTGGCAGTTGTGAGGCATTGATGCTGAGTTAAACAATAGAATTATATTTATTGTTAGTTGGTGAAGTTATTAAAACTCTATTTTGCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5W5U4	Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Q61496	ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2
Q9NQI0	Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens OX=9606 GN=DDX4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000987 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007276 all species →	Biological Process	gamete generation	Interproscan
GO:0030154 all species →	Biological Process	cell differentiation	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0160.g17.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.