Gene detail

Detailed information of amic_s0160.g32.t1 in Acropora microphthalma

Genomic Location: sc0000160_pilon:309196...313426
NR annotation: XP_029213239.2, doublesex- and mab-3-related transcription factor 3-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q18248	Doublesex- and mab-3-related transcription factor dmd-4 OS=Caenorhabditis elegans OX=6239 GN=dmd-4 PE=1 SV=2
A4QNP7	Doublesex- and mab-3-related transcription factor A2 OS=Xenopus tropicalis OX=8364 GN=dmrta2 PE=2 SV=1
Q90WM5	Doublesex- and mab-3-related transcription factor 3 OS=Takifugu rubripes OX=31033 GN=dmrt3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007682 (this species only)
Transcription factor family	DM · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00751 all species →	DM	DM DNA binding domain	Family	Interproscan
PF03474 all species →	DMA	DMRTA motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001275 all species →	Domain	DM DNA-binding domain	Interproscan
IPR036407 all species →	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan
IPR005173 all species →	Domain	DMRTA motif	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR026607 all species →	Family	DMRT family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12322 all species →	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007548 all species →	Biological Process	sex differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19491	DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.