Gene detail

Detailed information of amic_s0160.g42.t1 in Acropora microphthalma

Genomic Location: sc0000160_pilon:423847...440445
NR annotation: XP_029198033.2, importin-13-like isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0160.g42.t1

ATGAGTTTCACTGAAGAAGAGCTGCAAAGATTGCTTTTTCAATCTGAGCAGGCATTACTAGCCCTTTATAGTGGACAAAATCAAAATGAACGAGATGTGGCACACAAGTGGTTACTAACAACGCAAAAGTCGCCTCAAGCTTGGCAGCTATGTTGGCGTCTGATGCAGAGAGATAAGGCTCCAGAAATTCAATTCTTTGGGGCATCCATGCTTCACTTCAAGATTTCCAAGAATTGGAATGATCTTCAGGAAGAGCATTACAGTAGTCTGAGGACAGAAATCTTTAGACATATTTTATTGTTTTCATCCGGGCCAAGGATAGTATTGACAAGGCTTTGCATAGCACTTGGTGCATTTGCACTGAATACCATGCCTGATCACTGGAATAGTGCTATTAGTGAAATCATAAAAATACTTCAGAATGCTGCAGCCAATTCTTCACAGGGTGAAGTCTGGCCCATTTCAATGCTGGAGATTCTCACCGTACTCCCAGAAGAGTTTCATTCGGGAGATTTCTTACCTTTACGAAAGCAAGCTCTAAGAGGAGAATTGAACAGTGGATTACCCCAAGTGCTTCAAGTTATCCAGAAGTATTTATCACCTTCGCATTCAGTTCCAGTGCAACAACAGACACTGAAATGTCTAATCAGTTGGGTACAGTTTGGTGTGACAATTATGGATCTTGAAAATGTTCTCCCAGTAGTGTTTGAAGCAACTCGCAATCCAGAGTTATTTGATACTACTGTAGACTTGCTTGTTGAAATTGCTACACACCCATCAGGATCCAGTTACCCAACACATATGTGGAAGTTTTTGTCCAATGTCCTATTGCTTGGTGATCCATTAAGGACAGCTTTACAATCAGGGGACATGGACACCTCAAATGGATTGTGTCGCGTGTTGGTCTCATTAGCTGAGAGCCACATGAGGCTTCTTCTCTCAGCTGACAACGAAGAGCGAGAGTTGCAAGCATTTTCTCTTGTGCAGTTGTTATTGGAATGCACAGGAGCACCGGGGTGCTTTCCTACAGATGAACAGTGCAGCGAAATGACTTTCAACTTTTGGTACACACTACAGGATGATATTTTAACTCAAGAATCAAGTTTGATGGCAAAACACAAAGCTATGTATGGGCCTGTAATGCTTTCCCTTTGTCAGGTGCTAACAAGAAAGGTGCAGTACCCTCCGGAGGACATTTGGCAAGGATTTACAACAGATGAAAAAGAACAGTTCAGATGTTACAGACAAGATATTGCAGACACAATGATGTATGTCTATTGTTTGCTGAGAGGACATTGTTTGCAGCAATTTTGTCATATTTTATCGACACTACTCTCTGCGGAGGCAAAGCCGTCTTGGCAGTGCGTGGATGCGACTCTGTATTTGGTTCAAGCTGTATCCGAATATGTTGAACCCAACGAAGAAAGCTATATCCCGGCAATCCTGTCTATGTTACCGAGACTGCCTGATAATTCGTATGTCTCACAGACAGCTCTGCTAATGGTTGGTTCTTACTCTGAGTGGCTGAAATGTCATCCTGATCATCTGCGCTCAGTTCTTCCCGTTCTTCTTGGAGGTTTGTCTCAGGAACAACTTGCTTCAGCATCCACCCAGGCTTTGCGGGACATCTGTGAGGAGTGCGTCCAAGATATGGAACATAGTATTCTTTTGGAAATCCTCTCGCACTGCCAGGCAGCTTTATGTGGTTCTGTTATGAAAGAGCGTGAGCGAATTCGTTGTGTCGAGTGCATTGGCCATGTGTTATCAGTACAAGCCACTGCAACCGCCATAGACCGAGTGCGATCAATATTTAATCCATATTGTGAAGGATTAGCTCGGCTAGTACAGCATCAGGTGTCTCGAGAACTTAAAGATAATCTGCAATATCACCTTCAAGTTTTCATGGTACTTTTCAAGTGCTTGGACCCTGACAGTATTGAAAATAACACCCATCCAGCCGCCATTGTATTAAATGACATTTTACCGTCTCTGAAATCCATGGGTCATTGGTTACGGGAAAGTCAAATACAACAGTCGTTCTGCTTGTGCTTGGAAAGAGCGATGGGTACAATAAGAGATCACATGGGCGTGACACTGGTATCGAGCCTCGCTGAATTGATTGTTGGATATTACAATGCTTCTCCTAGCAGCGAGCTGCTGGATTCTGCTTCCACGTTAGTGGGTATGTACGGTATGGTGGATGAACATAAGCAAACAATGTTGTTTGTGTTTCAAAAAATGACATCTTCAACGCTTCAGCTACTTCAGCACAACTTCCGAGAGCATCCGGATATTCTTCAGTCATTCCTACAATTTGCTAATCGCAGTTTAAAGAGTAACCCAAAGTTAGTGTTTGAACCAGACAACCGTCATGTAAACATTTTTCAATGCGGCTTGGCCACCCTTGATGTTCAAGAGAGTCACACTGTGAGAGCGGCGTGTAGTTTCTTTTCCACGTTTATCACCGCTTCTGAAAATCAAGAAACGGCAAAGAACACTTTGTCTGAATATGGACCATATCTTGTCAGTCAAGTTGTGAAGGGAATTGCAGGAGGTGTTCCTCGACAATGCATTGATCACATGGCGGAAATCCTGTTCGCGTTGAACAGACATGACATATCTCTGTTGTCACGCTGGATGCAGGATGTAATGCAGGTTGAAGGATTTCCCTCGAGTTTGGTTTCTTTGACTCAAAAGCAAGACTTTGTCAAGGCTGTATTAAAGGAAAGAGCTCATCGAAGAAGAGTCAGGGATTCTGTCAAGGAATTCTCTCTGCTGTGCAGAGGGCTTTATGGGACCGCTTACGTCAGTTAA

Transcript

amic_s0160.g42.t1

CGTTGTAATGTTTGCGCCTAAAGCATTCAAGATGGCGGAAGAATTTGACATTTCGTGTGGATTAGAGTGTACGAGATCAAATTAAAGAGATGGAGAACGGATAAAAACCCGAGCGGCCAGATTTGATTTAATTAGCATGAGTTTCACTGAAGAAGAGCTGCAAAGATTGCTTTTTCAATCTGAGCAGGCATTACTAGCCCTTTATAGTGGACAAAATCAAAATGAACGAGATGTGGCACACAAGTGGTTACTAACAACGCAAAAGTCGCCTCAAGCTTGGCAGCTATGTTGGCGTCTGATGCAGAGAGATAAGGCTCCAGAAATTCAATTCTTTGGGGCATCCATGCTTCACTTCAAGATTTCCAAGAATTGGAATGATCTTCAGGAAGAGCATTACAGTAGTCTGAGGACAGAAATCTTTAGACATATTTTATTGTTTTCATCCGGGCCAAGGATAGTATTGACAAGGCTTTGCATAGCACTTGGTGCATTTGCACTGAATACCATGCCTGATCACTGGAATAGTGCTATTAGTGAAATCATAAAAATACTTCAGAATGCTGCAGCCAATTCTTCACAGGGTGAAGTCTGGCCCATTTCAATGCTGGAGATTCTCACCGTACTCCCAGAAGAGTTTCATTCGGGAGATTTCTTACCTTTACGAAAGCAAGCTCTAAGAGGAGAATTGAACAGTGGATTACCCCAAGTGCTTCAAGTTATCCAGAAGTATTTATCACCTTCGCATTCAGTTCCAGTGCAACAACAGACACTGAAATGTCTAATCAGTTGGGTACAGTTTGGTGTGACAATTATGGATCTTGAAAATGTTCTCCCAGTAGTGTTTGAAGCAACTCGCAATCCAGAGTTATTTGATACTACTGTAGACTTGCTTGTTGAAATTGCTACACACCCATCAGGATCCAGTTACCCAACACATATGTGGAAGTTTTTGTCCAATGTCCTATTGCTTGGTGATCCATTAAGGACAGCTTTACAATCAGGGGACATGGACACCTCAAATGGATTGTGTCGCGTGTTGGTCTCATTAGCTGAGAGCCACATGAGGCTTCTTCTCTCAGCTGACAACGAAGAGCGAGAGTTGCAAGCATTTTCTCTTGTGCAGTTGTTATTGGAATGCACAGGAGCACCGGGGTGCTTTCCTACAGATGAACAGTGCAGCGAAATGACTTTCAACTTTTGGTACACACTACAGGATGATATTTTAACTCAAGAATCAAGTTTGATGGCAAAACACAAAGCTATGTATGGGCCTGTAATGCTTTCCCTTTGTCAGGTGCTAACAAGAAAGGTGCAGTACCCTCCGGAGGACATTTGGCAAGGATTTACAACAGATGAAAAAGAACAGTTCAGATGTTACAGACAAGATATTGCAGACACAATGATGTATGTCTATTGTTTGCTGAGAGGACATTGTTTGCAGCAATTTTGTCATATTTTATCGACACTACTCTCTGCGGAGGCAAAGCCGTCTTGGCAGTGCGTGGATGCGACTCTGTATTTGGTTCAAGCTGTATCCGAATATGTTGAACCCAACGAAGAAAGCTATATCCCGGCAATCCTGTCTATGTTACCGAGACTGCCTGATAATTCGTATGTCTCACAGACAGCTCTGCTAATGGTTGGTTCTTACTCTGAGTGGCTGAAATGTCATCCTGATCATCTGCGCTCAGTTCTTCCCGTTCTTCTTGGAGGTTTGTCTCAGGAACAACTTGCTTCAGCATCCACCCAGGCTTTGCGGGACATCTGTGAGGAGTGCGTCCAAGATATGGAACATAGTATTCTTTTGGAAATCCTCTCGCACTGCCAGGCAGCTTTATGTGGTTCTGTTATGAAAGAGCGTGAGCGAATTCGTTGTGTCGAGTGCATTGGCCATGTGTTATCAGTACAAGCCACTGCAACCGCCATAGACCGAGTGCGATCAATATTTAATCCATATTGTGAAGGATTAGCTCGGCTAGTACAGCATCAGGTGTCTCGAGAACTTAAAGATAATCTGCAATATCACCTTCAAGTTTTCATGGTACTTTTCAAGTGCTTGGACCCTGACAGTATTGAAAATAACACCCATCCAGCCGCCATTGTATTAAATGACATTTTACCGTCTCTGAAATCCATGGGTCATTGGTTACGGGAAAGTCAAATACAACAGTCGTTCTGCTTGTGCTTGGAAAGAGCGATGGGTACAATAAGAGATCACATGGGCGTGACACTGGTATCGAGCCTCGCTGAATTGATTGTTGGATATTACAATGCTTCTCCTAGCAGCGAGCTGCTGGATTCTGCTTCCACGTTAGTGGGTATGTACGGTATGGTGGATGAACATAAGCAAACAATGTTGTTTGTGTTTCAAAAAATGACATCTTCAACGCTTCAGCTACTTCAGCACAACTTCCGAGAGCATCCGGATATTCTTCAGTCATTCCTACAATTTGCTAATCGCAGTTTAAAGAGTAACCCAAAGTTAGTGTTTGAACCAGACAACCGTCATGTAAACATTTTTCAATGCGGCTTGGCCACCCTTGATGTTCAAGAGAGTCACACTGTGAGAGCGGCGTGTAGTTTCTTTTCCACGTTTATCACCGCTTCTGAAAATCAAGAAACGGCAAAGAACACTTTGTCTGAATATGGACCATATCTTGTCAGTCAAGTTGTGAAGGGAATTGCAGGAGGTGTTCCTCGACAATGCATTGATCACATGGCGGAAATCCTGTTCGCGTTGAACAGACATGACATATCTCTGTTGTCACGCTGGATGCAGGATGTAATGCAGGTTGAAGGATTTCCCTCGAGTTTGGTTTCTTTGACTCAAAAGCAAGACTTTGTCAAGGCTGTATTAAAGGAAAGAGCTCATCGAAGAAGAGTCAGGGATTCTGTCAAGGAATTCTCTCTGCTGTGCAGAGGGCTTTATGGGACCGCTTACGTCAGTTAAAATGCATACGAGGTGTTAATTAGCTAACGAGAACTTTCCCTGGCGGCAATAGTAAGAAATTAGAGGCTCTCCAACGCTCTTACTAGCGTGAGTAGCAGCCTTCTGTGGCCATTGTTTCATAAATCGGTCTGTGATCCATGCGTTTTTTACGTTGCGGTCACGGTAGAAAACCCTTTGGCCGTTGCAGCTACTCATCTCCATTTCCGCCTCAATTAACTTTTTAAAACGGTCGTTTTAAAACGTGCTTAAAATGGCTCTCCAAAGTAGCAAAATACGACAAAACTGAAGCCGCTGCCCCCAGTTGAACGCTTTTCGCTTTTCATGATAATCGAACGAGGTGCAGCTCTGTATTACTGCCCAAAGCCAACGAGTTTCGAGAAAATAACTTGTCACGTAAGTAAATTTACAAGTCTTCAATTATGGGGTGTGGGTTAACTAGGTCATACCAACCCAAACCGCATATTTCTGCTGGGTATTTTGGTTTGCCCGTCACTGGAAAACGCCTATTACCGATAGATTCACGAACAGACGAAATGCCTGCTATCATAGCTTAGTAGGTGTCGAAACTTGTTTAATAGCATGAACAAACTGTCTGAAATGGATGCGATCCTCCTTTAGAAATTGTCCGAATTCCAATGCACGGGATGCACTGAAATGAGCCTGAAATCGAGGCTGGTTCGGGGGTATATTATCTATTTCCAGTCTCTTCGCTTGTTCGAATATGATCCATATTTCGAGTGTGTATGTTGTTAAATAAATATTCCAATGACGATTCAGGGTATAATATATAACGAACAGTTGCGTAGTGGGAGGTATCTGCTGTTGGGAACTTTTAAGAGATAACTTAAAAAGTCAGCCTGTCTTCGACAAAGTAATGGCAAAGTCAGCAAACCTCAGCGGTACAGTCAGGCTTCCTTCATTTTTTTTTACAGTCGACTATTAAAGCTTTCTACTTCTATTTATCAGGACCTGAAAACTGTTGGTTCCAAAAAGTTTGCCTTCCTAATCATCCGTTCTAAGAAaagtaaactgagtctccgtgacaggcttgtttctcaaaagccgtgaaatttttcgggcgtatttcgggtgtcacaattccctttatatctccgcaacgccaaggttctaagccataaccttcacaatcatcttggtttttTCTCTTTTGCCCCACAAGGTGTATATTAGATTTACTTTTAAATGAGCGCAGTAAAAACTTATAGGAAATGTACGAAAAGCTCGTAAGGGTTTGACTTGTTCATGGTTTGACCTGCAACTGTTTTGAAGATGTAATTTATTTTAATTAATATATTCTATGGTCGAATCAAACGTAATATACTGTCTGTTCATGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7YWD2	Importin-13 OS=Bos taurus OX=9913 GN=IPO13 PE=2 SV=1
O94829	Importin-13 OS=Homo sapiens OX=9606 GN=IPO13 PE=1 SV=3
Q8K0C1	Importin-13 OS=Mus musculus OX=10090 GN=Ipo13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005866 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF18806 all species →	Importin_rep_3	Importin 13 repeat	Repeat	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF18773 all species →	Importin_rep	Importin 13 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR051345 all species →	Family	Importin beta-like nuclear transport receptors	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR040520 all species →	Repeat	Importin 13 repeat	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR040709 all species →	Repeat	Importin 13, repeat 1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12363 all species →	TRANSPORTIN 3 AND IMPORTIN 13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25202	IPO13, RANBP13; importin-13	-	Nucleocytoplasmic transport	ko03013	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.