Detailed information of amic_s0160.g50.t2 in Acropora microphthalma

Genomic Location: sc0000160_pilon:554103...575767
NR annotation: XP_029198094.2, nuclear factor 1 B-type-like isoform X3 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P70255Nuclear factor 1 C-type OS=Mus musculus OX=10090 GN=Nfic PE=1 SV=1
P08651Nuclear factor 1 C-type OS=Homo sapiens OX=9606 GN=NFIC PE=1 SV=2
P21999Nuclear factor 1 C-type OS=Sus scrofa OX=9823 GN=NFIC PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002791 (this species only)
Transcription factor familyCTF_NFI · all TF in this species
Transcription factor familyMH1 · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03165
all species →		MH1MH1 domainDomainInterproscan
PF00859
all species →		CTF_NFICTF/NF-I family transcription modulation regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020604
all species →		DomainCTF transcription factor/nuclear factor 1, DNA-binding domainInterproscan
IPR003619
all species →		DomainMAD homology 1, Dwarfin-typeInterproscan
IPR000647
all species →		FamilyCTF transcription factor/nuclear factor 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11492
all species →		NUCLEAR FACTOR IInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0160.g50.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP