Detailed information of amic_s0160.g55.t2 in Acropora microphthalma

Genomic Location: sc0000160_pilon:636789...659867
NR annotation: XP_029198037.2, LOW QUALITY PROTEIN: nipped-B-like protein [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
F1QBY1Nipped-B-like protein B OS=Danio rerio OX=7955 GN=nipblb PE=2 SV=1
Q6KCD5Nipped-B-like protein OS=Mus musculus OX=10090 GN=Nipbl PE=1 SV=1
Q6KC79Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002809 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12830
all species →		Nipped-B_CSister chromatid cohesion C-terminusRepeatInterproscan
PF12765
all species →		Cohesin_HEATHEAT repeat associated with sister chromatid cohesionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033031
all species →		FamilyScc2/Nipped-B familyInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR024986
all species →		DomainSister chromatid cohesion C-terminal domainInterproscan
IPR026003
all species →		RepeatHEAT repeat associated with sister chromatid cohesion proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21704
all species →		NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0010468
all species →		Biological Processregulation of gene expressionInterproscan
GO:0034087
all species →		Biological Processestablishment of mitotic sister chromatid cohesionInterproscan
GO:0061780
all species →		Biological Processobsolete mitotic cohesin loadingInterproscan
GO:0071169
all species →		Biological Processestablishment of protein localization to chromatinInterproscan
GO:0090694
all species →		Cellular ComponentScc2-Scc4 cohesin loading complexInterproscan
GO:1990414
all species →		Biological Processreplication-born double-strand break repair via sister chromatid exchangeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K06672SCC2, NIPBL; cohesin loading factor subunit SCC2-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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