Gene detail

Detailed information of amic_s0161.g29.t1 in Acropora microphthalma

Genomic Location: sc0000161_pilon:215316...232999
NR annotation: XP_029192572.2, protein retinal degeneration B-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0161.g29.t1

ATGTTGATCAAAGAATACAGAATTCCTCTGCCTATGAGCGTCGAGGAGTACCGTATCGCACAGCTGTACATGATACAGAAAAAGAGCCGAGTGGATAGTATTGGTGAAGGAAGTGGAGTAGAGATTCTTGAAAACACTCCTTACACAGATGGACCAGGTGGAAGTGGGCAGTATACCAAGAAGATCTACCATATAGGAAGCCATTTACCAGGCTGGCTTAAGGCAATTCTCCCCAAAGCAGCATTACGAGTTGAAGAGGAGGCATGGAATGCATACCCCTACACAAAGATGAGAACAACATGTCCATTTGTAGAGAAGTTCTTTGTTGATGTGGAGACGTTTTATTTACCAGATGCAGGACAACAGGAAAATGTGTTCAACTTGTCTCCAGCTGATCTTCAAGGAAGAGAAGTTGATATCATTGACCCAGTAAAGGATCCAGTATCCGCTTCAGAATACTGTGAGGAAGAAGACCCACTGTTTTATCGATCCAATAAAACAGGGCGGGGCCCAATCAAGGAGAACTGGCTTGAACATTATAGGGTAGACAATCCTCCCTCTGATGTCATGTGTGCATACAAACTTATAAAGGTGGAGTTCAAATACTGGGGGATGCAGAATAAAATCGAGCATTTCATTCACTTGGGTTTGCGCCGTCCCATGTTAATGGGTCACAGACAGGCATGGGTGTGGCAAGATGAATGGTACGGATTAACGATGGAGGATATAAGGAAACTGGAGGAAGAAACGCAAAGAATACTGGCCAGGAAAATGGGAAAATTGCTGAACCCTGCCGTCACGAGACGGTCTTCTCAGGATAGGGAATCAGACCAAGAGGAGGGCTTTGCTAACGAGGGACGAGGAAGTGTTGTATATGTTCAGGACAGTAACGATGGCATTAAGCTAGAAACTATTGCGAATGGTTCACCACAGCGAGTGGGTGGATCGGTGTGTTCTGCACCTGTTGCGATAACTATACAGAAATTTGGATATGATGCTGAAGATCAGGATCAAGTGTTGCCAGATAAGCTGACCCAGAAAAGCACGCAGTGTAATGGAATGAGCCCAGAGGGATCCGTTGATAGGAGACTTGCACAAGCTGATTATCTGAAGGGCTACAGAATGAGCACCATAGAAACCGTGGACTCTGAGTCTGAAGATGATGAGTTTTTTGATGCACAAGAGGAGCTTGAGGGTGGGCAGCTCAGTTCCAATCTGCTTTCCATTCATAACGTGGAGCTTGGAAGTAGTTTTAAGAGCTTAGAGTTGGACACGGACTCCTCTCGGGGTAGTATGGAGTCTTTGGATTCCATAGCATCTTCAATAACGGATGAACAGAGCTTAGAGAAGTCTCCCCGGCTCTCGAGGAAGGAACCTCTATCCAAGAAAGTTAGCGACACCTCAACATGCTCGATACCAGCCTCCCGCATAACCAACCTCATTTTGGTGATCCACGGAGGCACTCAAGTCGACGCGAGCCTGGATCCTACGTCACGTGATGTTGACTTCAAGCTATTGCAGGACGCATTTGAAGCTGTGGTTCATTTGCACTACAGGGGAGCAGCGGGGAAAATCGCATTACGACTGGTTGAATGTCCTGCAATTTGCAGTAAAGCACTTTCTCTGTTGTCTCAACTATGTCCGTATTCGGAGAGCGATTCAGATAAGGGAAGTGTCAACAGTGGCTTCACTCCAGTTTCCAGTAGTTTTCCTTTAAGCGCCATATCTCTCATGGTTTCTTCTTCGCCATTTTACAATGATGCTGTGAATTCCATGGTGGTCGCTGCTAACATGGTGTACCGTGAGTTCCTGAAGTCTGATGAAGGTCAGGGGTTCAGAGGAGAGGTTTGTCTCCTTGGTGACTGCATGGGCGCACTTCTCGCCTACGACGCCCTCATTAGCAACGAGAACACTCTACAAAACCGCATGCAGAGCTTCAACACGGCAATGCTGTCTCCTCATTCCCCAACAGGGGGCTTCAACAATGCAGAAACAAATGGTAGCATGCTTAGGAAACCGAGGCGAACCAGCAGCCACACGCCACCTTGCAAAAGCAACCTCCAGAATTCGCAGCACCTGCGGCTGAGCGTTAGCAGCGGAAATATTCGCGAGAACGTCGATCCAGAGATGGATGAGATGATATGCTCCCCACCAGACGAGGAAATGGAACCAAGCGGTTTACATTCGCCACATCCGCTCAGCAAAGCTGCCAGACTGCAAACATTCAGTTTCGAGAACATGTCGCTTTCCGTTGACTCAGTAGAGCAACTGCTATTTGATTTTGAAGTGTCAAAGTTCTTCACGTTTGGCTCACCAATTGGACTGGTGTTAGCGTATAGAAGATTCAAGAATGGCGAGGATAGAGGAGTGCCGCCGAAACCTGCTTGCAACCAAGTTTACAACTTGTTTCATCCGTTTGACCCGTCTGCTTCTCGAATCGAACCTTTGATCATGCACCAGTTCTCAAACATTCCAGCTGTAAATGTCCCGCGCTATCAACGCTTCCCTCTCGGAGATGGCCAGTCTCATTTGCTCAACAATGTAATCGGTGCATTCCCCGAGTTGTTCGTTCCCCAGCCAACCAGTCCTGGAACCCAGTTTCGCTCGGGTTTGGCACAACGTGACATTGACTTAAGCGCGGGAAGCCAGGGGTCATGTGACGGCTCAGATAGTCCTCAAGGAGGGGTGGATTCAGATGCAGCGGCAACAAACTGGTGGGGTACTAAGCGGGTGGACTTCGCTCTGTACTGTCCCGAGGGTCTCCAACAGTTCCCAACAGCTGTCCTGTCGCCGTTATTCCATGTCAGCTACTGGGAATCCAGCGACGTGGCTGCGTTCGTCGTTAGAGAGATTCTTCATGGAGAGTGGGACATTGCAAGCGTTTCTTCTCCCAGTAGAAGAGGTCAGACGTTTTGTCCTTTGAAACCAAGAGAAAAGTGGCTAAAAAGAAGAACTGCGATTAAAATTAAGAATCTGAGTGCTAATCATCGAGCTAATGACTGCATTACATTGGAAGACCAGGAGCAGACTCTCATCGCTCGGTTCATGTATGGACCTCTTGATATGGTGTCACTCAGTGGCGAAAAGGTGGACGTGTACGTCATGACCCAACCACCCTCCGGTGAGTACGTCCTTTTTGACACAGCTGTAACTGGAAGTGGCGGAAAGTTTTCATTCTCCATTCCTGAAGACAAGAAACTTCCGGTTGGGATCTACCCCTTCAAGCTGGTTGTGAGGGGTGACCATACCTGGGTAGACAGCAATCTGGCCGTGTTGCCGCCCAAAACTGAAGCTGTTGTGTTCAGTATCGACGGTTCCTTTACTGCAAATGTTTATATTCGTGGCAAGGACCCAAAAGTCCGCGCGGGTGCTGTGGATGTCGTGAGGCACTGGCAGGAATTAGGGTTTTTAATTATATACGTGACGAGTCGCCTGGATTTTCAGAAAATCAAAGTAATGTCTTGGCTGGCTGAACATAATTTCCCTTATGGACTGGTGTCGTTTTGCAGCGGCATCTCCAAGGATATTCAACGACACAAAACCGAATTTCTGCGCTATCTTGTCAATGATTGTCAAGTGCAGATTTACGCAGCCTACGGATCAGTCAAGGACATATCAGTGTATGCATCGATTGGTATTAAGCCACAGCAGATTTACACTGTGGGAAAACATCATCCCAGGAAATACACCAGTCAAGCACAGTTTCTTAAAGATGGTTATGCTACTCATCTCACTTCTCTGTCCAACCAATCAAGATCAGCAGTTGGAAATCCCCGGTTGATCCTCAGGCGGGGCTGTTTTGGCCTCCCATCGCGTTTAAGCAGAACAAGGACCAAGATTAAGCGTTCCATTACAGATAAGCCCTCCATCGATTCCGATAAAGAATCTTCCACTCTTTCTGGTTCCTTCAATTACTCTTCCTTTAGACACACTAAGGGCCGATCCATGAGTAAGTTTGATCAAGGGTATTAG

Transcript

amic_s0161.g29.t1

AGGCGAGAGGAAGGTGTATTCTCAAACGGAAATGAGGCTGAAGCCATCTGTTAGTCGACCCGTAGTGACGTCATTCAAAATGGCTTCCGGCCGCTTCAGTTGAAGTTGTTGTGTTTACCTGAGCGGACAGCGCGGTTGCTGTTCGACATTAATCTTTTCGGTTTCATGTGAGACTCAAATTCACGGCCTGTACTCGATACAAGGCCTTCACGTACTCTACGATTAGATTTAGAGCTTTTTGGACAACACCTCCTTGGACGATATGTTGATCAAAGAATACAGAATTCCTCTGCCTATGAGCGTCGAGGAGTACCGTATCGCACAGCTGTACATGATACAGAAAAAGAGCCGAGTGGATAGTATTGGTGAAGGAAGTGGAGTAGAGATTCTTGAAAACACTCCTTACACAGATGGACCAGGTGGAAGTGGGCAGTATACCAAGAAGATCTACCATATAGGAAGCCATTTACCAGGCTGGCTTAAGGCAATTCTCCCCAAAGCAGCATTACGAGTTGAAGAGGAGGCATGGAATGCATACCCCTACACAAAGATGAGAACAACATGTCCATTTGTAGAGAAGTTCTTTGTTGATGTGGAGACGTTTTATTTACCAGATGCAGGACAACAGGAAAATGTGTTCAACTTGTCTCCAGCTGATCTTCAAGGAAGAGAAGTTGATATCATTGACCCAGTAAAGGATCCAGTATCCGCTTCAGAATACTGTGAGGAAGAAGACCCACTGTTTTATCGATCCAATAAAACAGGGCGGGGCCCAATCAAGGAGAACTGGCTTGAACATTATAGGGTAGACAATCCTCCCTCTGATGTCATGTGTGCATACAAACTTATAAAGGTGGAGTTCAAATACTGGGGGATGCAGAATAAAATCGAGCATTTCATTCACTTGGGTTTGCGCCGTCCCATGTTAATGGGTCACAGACAGGCATGGGTGTGGCAAGATGAATGGTACGGATTAACGATGGAGGATATAAGGAAACTGGAGGAAGAAACGCAAAGAATACTGGCCAGGAAAATGGGAAAATTGCTGAACCCTGCCGTCACGAGACGGTCTTCTCAGGATAGGGAATCAGACCAAGAGGAGGGCTTTGCTAACGAGGGACGAGGAAGTGTTGTATATGTTCAGGACAGTAACGATGGCATTAAGCTAGAAACTATTGCGAATGGTTCACCACAGCGAGTGGGTGGATCGGTGTGTTCTGCACCTGTTGCGATAACTATACAGAAATTTGGATATGATGCTGAAGATCAGGATCAAGTGTTGCCAGATAAGCTGACCCAGAAAAGCACGCAGTGTAATGGAATGAGCCCAGAGGGATCCGTTGATAGGAGACTTGCACAAGCTGATTATCTGAAGGGCTACAGAATGAGCACCATAGAAACCGTGGACTCTGAGTCTGAAGATGATGAGTTTTTTGATGCACAAGAGGAGCTTGAGGGTGGGCAGCTCAGTTCCAATCTGCTTTCCATTCATAACGTGGAGCTTGGAAGTAGTTTTAAGAGCTTAGAGTTGGACACGGACTCCTCTCGGGGTAGTATGGAGTCTTTGGATTCCATAGCATCTTCAATAACGGATGAACAGAGCTTAGAGAAGTCTCCCCGGCTCTCGAGGAAGGAACCTCTATCCAAGAAAGTTAGCGACACCTCAACATGCTCGATACCAGCCTCCCGCATAACCAACCTCATTTTGGTGATCCACGGAGGCACTCAAGTCGACGCGAGCCTGGATCCTACGTCACGTGATGTTGACTTCAAGCTATTGCAGGACGCATTTGAAGCTGTGGTTCATTTGCACTACAGGGGAGCAGCGGGGAAAATCGCATTACGACTGGTTGAATGTCCTGCAATTTGCAGTAAAGCACTTTCTCTGTTGTCTCAACTATGTCCGTATTCGGAGAGCGATTCAGATAAGGGAAGTGTCAACAGTGGCTTCACTCCAGTTTCCAGTAGTTTTCCTTTAAGCGCCATATCTCTCATGGTTTCTTCTTCGCCATTTTACAATGATGCTGTGAATTCCATGGTGGTCGCTGCTAACATGGTGTACCGTGAGTTCCTGAAGTCTGATGAAGGTCAGGGGTTCAGAGGAGAGGTTTGTCTCCTTGGTGACTGCATGGGCGCACTTCTCGCCTACGACGCCCTCATTAGCAACGAGAACACTCTACAAAACCGCATGCAGAGCTTCAACACGGCAATGCTGTCTCCTCATTCCCCAACAGGGGGCTTCAACAATGCAGAAACAAATGGTAGCATGCTTAGGAAACCGAGGCGAACCAGCAGCCACACGCCACCTTGCAAAAGCAACCTCCAGAATTCGCAGCACCTGCGGCTGAGCGTTAGCAGCGGAAATATTCGCGAGAACGTCGATCCAGAGATGGATGAGATGATATGCTCCCCACCAGACGAGGAAATGGAACCAAGCGGTTTACATTCGCCACATCCGCTCAGCAAAGCTGCCAGACTGCAAACATTCAGTTTCGAGAACATGTCGCTTTCCGTTGACTCAGTAGAGCAACTGCTATTTGATTTTGAAGTGTCAAAGTTCTTCACGTTTGGCTCACCAATTGGACTGGTGTTAGCGTATAGAAGATTCAAGAATGGCGAGGATAGAGGAGTGCCGCCGAAACCTGCTTGCAACCAAGTTTACAACTTGTTTCATCCGTTTGACCCGTCTGCTTCTCGAATCGAACCTTTGATCATGCACCAGTTCTCAAACATTCCAGCTGTAAATGTCCCGCGCTATCAACGCTTCCCTCTCGGAGATGGCCAGTCTCATTTGCTCAACAATGTAATCGGTGCATTCCCCGAGTTGTTCGTTCCCCAGCCAACCAGTCCTGGAACCCAGTTTCGCTCGGGTTTGGCACAACGTGACATTGACTTAAGCGCGGGAAGCCAGGGGTCATGTGACGGCTCAGATAGTCCTCAAGGAGGGGTGGATTCAGATGCAGCGGCAACAAACTGGTGGGGTACTAAGCGGGTGGACTTCGCTCTGTACTGTCCCGAGGGTCTCCAACAGTTCCCAACAGCTGTCCTGTCGCCGTTATTCCATGTCAGCTACTGGGAATCCAGCGACGTGGCTGCGTTCGTCGTTAGAGAGATTCTTCATGGAGAGTGGGACATTGCAAGCGTTTCTTCTCCCAGTAGAAGAGGTCAGACGTTTTGTCCTTTGAAACCAAGAGAAAAGTGGCTAAAAAGAAGAACTGCGATTAAAATTAAGAATCTGAGTGCTAATCATCGAGCTAATGACTGCATTACATTGGAAGACCAGGAGCAGACTCTCATCGCTCGGTTCATGTATGGACCTCTTGATATGGTGTCACTCAGTGGCGAAAAGGTGGACGTGTACGTCATGACCCAACCACCCTCCGGTGAGTACGTCCTTTTTGACACAGCTGTAACTGGAAGTGGCGGAAAGTTTTCATTCTCCATTCCTGAAGACAAGAAACTTCCGGTTGGGATCTACCCCTTCAAGCTGGTTGTGAGGGGTGACCATACCTGGGTAGACAGCAATCTGGCCGTGTTGCCGCCCAAAACTGAAGCTGTTGTGTTCAGTATCGACGGTTCCTTTACTGCAAATGTTTATATTCGTGGCAAGGACCCAAAAGTCCGCGCGGGTGCTGTGGATGTCGTGAGGCACTGGCAGGAATTAGGGTTTTTAATTATATACGTGACGAGTCGCCTGGATTTTCAGAAAATCAAAGTAATGTCTTGGCTGGCTGAACATAATTTCCCTTATGGACTGGTGTCGTTTTGCAGCGGCATCTCCAAGGATATTCAACGACACAAAACCGAATTTCTGCGCTATCTTGTCAATGATTGTCAAGTGCAGATTTACGCAGCCTACGGATCAGTCAAGGACATATCAGTGTATGCATCGATTGGTATTAAGCCACAGCAGATTTACACTGTGGGAAAACATCATCCCAGGAAATACACCAGTCAAGCACAGTTTCTTAAAGATGGTTATGCTACTCATCTCACTTCTCTGTCCAACCAATCAAGATCAGCAGTTGGAAATCCCCGGTTGATCCTCAGGCGGGGCTGTTTTGGCCTCCCATCGCGTTTAAGCAGAACAAGGACCAAGATTAAGCGTTCCATTACAGATAAGCCCTCCATCGATTCCGATAAAGAATCTTCCACTCTTTCTGGTTCCTTCAATTACTCTTCCTTTAGACACACTAAGGGCCGATCCATGAGTAAGTTTGATCAAGGGTATTAGAAGTGAGCCATGATATTGAGTCGTCGTCTTTAAGCTACGGCTGTGCGCATCCCTAATTTGAAGCATACGTTTATCGGCCATTTTGAGTCTTGTCAGGTTGGGTTGATCGGAGATTGGAGAAAGAAACTTAAGTGCTACGCGAATGCGCTTAAAATCCATGAAAAATGACACACTTAATAACTTCTTTTAAAAAAATGAAATAATCTATTGAATTTATTGTAAACGCATCATGTGATTATCGTCTTTATCGTAATAGTTGATTGCAATTAACCATTGATGAGCTGTTAGAAGCATCAAAAGCTGCGACATCTTTTGTTTCTTTGGAGAGGATTAGTTCCGTTAGGAGTATAATGGTCAAAGAGTTTCCTGTTCTTCCGTTTGATCGTCGAATTCGTACTTAAGCGCAAAACTGACCTTATCGATGCAACAGTGGGCGCCATCATCTAGGAAGAGCGGCAAATCTACCGAGTGGGTGGGGACACTTTTCCCCTCCCGAAACCACTATCACTGTTGCCAATGAAAGTGACATCATTTTTAAGAAGGGAACGAATGCGACGATCGCCGTACTATTAAAATATCGCCGTACTATTAAAATAGGAAGTGTGAATTGTCAACACCGGCTGTTGGCTTAGAAACAACTTACCCTATTGTTAGGGAGTGACCCTCTAGGGACACAATTATTGTAAATAAGGCATTGTAACGTCACAAATCAATCGCTGGTCAAATCTAGAAAGCGCAGCGTTGTAGAATCGTAGCACTGGCTAGCCGACTTCATCTTCTTTGAAATAGTAATTTTGTTTACAAGCAAGCAAGGCAGCTATCGCAGTGGCCTATCATAGTTCATTGTAGGTAAAATATTTATTTGAAGCCATACTTATGTAATATAGGTATTTAAGTTGTAGAGTTGGCTTGTGAACTCTTCGTGGTGATGAACAAATCTTGTAGCACTGAATAGCGCATGCGTGGAAAACAAGGGTCCGAGTTGCTGATGATTCTCGCAGTTCTATCTTCATCTCTAGTGATCTTTTTGTTATTCACCAGCCCTACGACATCAACGCTTTTTTCGGTAGATCAAGTGTTAACGTCAGTTATTTGCATCTTTACGAGTTTAGATGATTATGAGTTTCACTTTTTACCACCAAGTCGTGGTTTGAGTCATCTGCTCTCGTTTCGTAGAACTAATTTTTGTTAATGCATAAGGTGGCTCAAGACTGACCTGATTTTACTTTTATTTGTTTATTGAGATTATCAGTGGTGCTAGATACACCCTTTTATGTACATACTGCTAAATTTGCCAACCAGTGCGATTGAGGAAATGTTCTTTTTCTTTCGCATGTCTGAAGCCAGTTTAAATACAGGTGGTGGAAGTTATTCCAACCCTTCGCCTTTGGATCGCAAAGCAATATCATCAAATTCAAGTTTAATCATCGATGGAGTATTTAAGTATTGAACTGAATTATCGCAACTCTGACGTCACTCACCACTGGCTGGTCCAAGCGTAGTCAGATAAGTTACTATGAAGAGACAAAAATAAAGTAATCACATCATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BZ72	Membrane-associated phosphatidylinositol transfer protein 2 OS=Homo sapiens OX=9606 GN=PITPNM2 PE=1 SV=1
Q6ZPQ6	Membrane-associated phosphatidylinositol transfer protein 2 OS=Mus musculus OX=10090 GN=Pitpnm2 PE=1 SV=2
P43125	Protein retinal degeneration B OS=Drosophila melanogaster OX=7227 GN=rdgB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004559 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02121 all species →	IP_trans	Phosphatidylinositol transfer protein	Family	Interproscan
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023393 all species →	Homologous_superfamily	START-like domain superfamily	Interproscan
IPR001666 all species →	Family	Phosphatidylinositol transfer protein	Interproscan
IPR004177 all species →	Domain	DDHD domain	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR031315 all species →	Domain	LNS2/PITP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10658 all species →	PHOSPHATIDYLINOSITOL TRANSFER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005548 all species →	Molecular Function	phospholipid transporter activity	Interproscan
GO:0015914 all species →	Biological Process	phospholipid transport	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008525 all species →	Molecular Function	phosphatidylcholine transporter activity	Interproscan
GO:0008526 all species →	Molecular Function	phosphatidylinositol transfer activity	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24069	PITPNM; membrane-associated phosphatidylinositol transfer protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Acropora microphthalma tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Acropora microphthalma, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →