Gene detail

Detailed information of amic_s0161.g40.t1 in Acropora microphthalma

Genomic Location: sc0000161_pilon:397186...411940
NR annotation: XP_029190735.2, LOW QUALITY PROTEIN: nitric oxide synthase, endothelial-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0161.g40.t1

ATGGATTCTATCGACGGAACAGTAATAGTGAATCTAACGAAACGCAGAAAAGGTGGCGTCGGTTTTTTAGCTTGCAACACCGGCCCTTACCTCACGGTGTCACACGTGGTAAAGGGTGGCGTGGCGCATGAAACGGGTTTTATTGAAAAGGGAGATGTCATTCTTGAAGTTAATGGCAAGTCATTGGAGAGAGTGCCCTATTTAAAGGCCTTAGAAATTCTTGACCTTGCCCCAATTGGCGAGATCATGGCGTTGAAAATTCGAGCTCAAGATGGATTTCAAGCGGAACTGGAAACTGTGTTCGATTCGGAAGGAGTCGTGAGAACAGTTCGAAGGACAAGACAGTCTTCCAAAAGCGCACCAAGTACGTTGGAGAACGGGAAAATGAAAAATGAAAAAAATATGGACGCAAAGACTAATGGAGAAAAATCGGAGCCAAGTGAATTAGTGAGCCCAAGAGAATCGAAGGGTGGAACGGTGACAAACTCTCTTCCAAATACTAAAATGTCTTCTAAATGTTTAGAAGTCGTTCATGAAAATGTTAATGGCGAGAAACAAGAACAAGAGACAACGAAAGAGGAGAAACTGACTTTAAATGGAGCTGACGACGTTGAAAAGGAGCCCATAGGCAACGAAAAAGAACAAGGGACGCTGAAGGAAAAGAAAACGACTTTACACGAACCAGATGAAACCAATAATAAGAATGATGATCCAGGGAAAGGAAGAAGTGTGTCAAATGAATCAGTTGGAATTAACAAATGTCCCCTAACCCATCCAAAGTCGCTTTACCAACAGCCAAAGTATGTTAAGCTGCAAAACCTCCTATCCAATACTTTTACCACTGATACTCTTCATCAAAAGGCAATAGAGCCTCTCCACTGTTCCTCAGACCGTTGTTTGGGTTCCTTGATGCAGCCGTATGGTGCTTTCCCTAAGAGGCAATATGGTGTGCCCAGAGTACCCGAAGAGGTCAAACTTCAGGCAAAGGACTTCCTTCAACAGTATTACGACTCGATGAAACTTCAAGACAGTCCAGCTTACCATCAGCGACTGGCCGAGGTGTTGAAGGATATTGAGGAGACTGGTACTTATGAATTGGCAGAGAAGGAGCTTATCTTCGGCTGCCGTTTGGCTTGGAGGAACGCCTCGCGGTGCATAGGACGGATACAGTGGAATAAATTACACGTTTTTGATGCCAGAGATGTGAATACTCCTGCAGAAATGTTTGAAGCGCTATGCAAGCATATAAAGTACGGCACAAACAAGGGAAACATCAGGTCCACTATAACCATCTTCCCTCAAAGAAAACGCCCATTCAAAGATTTCCGTGTATGGAATTCTCAGCTAATTCGGTACGCTGGCTACAAGCAGTCAGATGGTTCTGTTCTCGGAGACCCTGCTAATGTTGAGTTTACTGAGATCTGTGTGCAGCTTGGTTGGGAAGGCAAAGGAGGCAATTTTGATGTTTTGCCGTTAGTTCTTCAAGCTCATGGCGAGGATCCCGAGATGTTTGAAATACCTCCGGAAATTGTTCTTGAGGTGGAAATGAAACACCCGAAGTATCCTTGGTTTGAAGAGTTCGGTTTGAGGTGGTACGCTTTACCTGCTGTGTCGTGTTTGATGTTAGATGTTGGAGGAGTCGAGTTTCCCGCTTGTCCGTTTAACGGATGGTACATGGTGACAGAAATTGGGGCTCGTGACTTCGGTGATCCATGCCGCTATAACATGCTGGAGCCTGTGGCGAAGCGGATGGGCCTGGACACAAAGAGCCCAACTTCTCTTTGGAAAGACTTCGCTATGGTTGAAATAAACCTGGCAGTGCTACATAGCTTTCAGGAAGCCTCAGTTACCATCATTGATCACCACAGTTGTTCAGACTCTTTCTTGAAACACGTCGAGAACGAGGTTAAATTCCGTGGAGGATGTCCAGGGGATTGGGTATGGATCGTTCCTCCGATGTCAGGCAGCGCTACTGGTGTTTTTCATCAGGAAATGTTAAACTACTACTTGAAGCCAAGTTACGAGTATCAGGACGATCCTGGCTAA

Transcript

amic_s0161.g40.t1

TTGAGGCGAGCAATATTACTTTTCAGTTAGCGAGGTACATAAAATTGAGAACATGGATTCTATCGACGGAACAGTAATAGTGAATCTAACGAAACGCAGAAAAGGTGGCGTCGGTTTTTTAGCTTGCAACACCGGCCCTTACCTCACGGTGTCACACGTGGTAAAGGGTGGCGTGGCGCATGAAACGGGTTTTATTGAAAAGGGAGATGTCATTCTTGAAGTTAATGGCAAGTCATTGGAGAGAGTGCCCTATTTAAAGGCCTTAGAAATTCTTGACCTTGCCCCAATTGGCGAGATCATGGCGTTGAAAATTCGAGCTCAAGATGGATTTCAAGCGGAACTGGAAACTGTGTTCGATTCGGAAGGAGTCGTGAGAACAGTTCGAAGGACAAGACAGTCTTCCAAAAGCGCACCAAGTACGTTGGAGAACGGGAAAATGAAAAATGAAAAAAATATGGACGCAAAGACTAATGGAGAAAAATCGGAGCCAAGTGAATTAGTGAGCCCAAGAGAATCGAAGGGTGGAACGGTGACAAACTCTCTTCCAAATACTAAAATGTCTTCTAAATGTTTAGAAGTCGTTCATGAAAATGTTAATGGCGAGAAACAAGAACAAGAGACAACGAAAGAGGAGAAACTGACTTTAAATGGAGCTGACGACGTTGAAAAGGAGCCCATAGGCAACGAAAAAGAACAAGGGACGCTGAAGGAAAAGAAAACGACTTTACACGAACCAGATGAAACCAATAATAAGAATGATGATCCAGGGAAAGGAAGAAGTGTGTCAAATGAATCAGTTGGAATTAACAAATGTCCCCTAACCCATCCAAAGTCGCTTTACCAACAGCCAAAGTATGTTAAGCTGCAAAACCTCCTATCCAATACTTTTACCACTGATACTCTTCATCAAAAGGCAATAGAGCCTCTCCACTGTTCCTCAGACCGTTGTTTGGGTTCCTTGATGCAGCCGTATGGTGCTTTCCCTAAGAGGCAATATGGTGTGCCCAGAGTACCCGAAGAGGTCAAACTTCAGGCAAAGGACTTCCTTCAACAGTATTACGACTCGATGAAACTTCAAGACAGTCCAGCTTACCATCAGCGACTGGCCGAGGTGTTGAAGGATATTGAGGAGACTGGTACTTATGAATTGGCAGAGAAGGAGCTTATCTTCGGCTGCCGTTTGGCTTGGAGGAACGCCTCGCGGTGCATAGGACGGATACAGTGGAATAAATTACACGTTTTTGATGCCAGAGATGTGAATACTCCTGCAGAAATGTTTGAAGCGCTATGCAAGCATATAAAGTACGGCACAAACAAGGGAAACATCAGGTCCACTATAACCATCTTCCCTCAAAGAAAACGCCCATTCAAAGATTTCCGTGTATGGAATTCTCAGCTAATTCGGTACGCTGGCTACAAGCAGTCAGATGGTTCTGTTCTCGGAGACCCTGCTAATGTTGAGTTTACTGAGATCTGTGTGCAGCTTGGTTGGGAAGGCAAAGGAGGCAATTTTGATGTTTTGCCGTTAGTTCTTCAAGCTCATGGCGAGGATCCCGAGATGTTTGAAATACCTCCGGAAATTGTTCTTGAGGTGGAAATGAAACACCCGAAGTATCCTTGGTTTGAAGAGTTCGGTTTGAGGTGGTACGCTTTACCTGCTGTGTCGTGTTTGATGTTAGATGTTGGAGGAGTCGAGTTTCCCGCTTGTCCGTTTAACGGATGGTACATGGTGACAGAAATTGGGGCTCGTGACTTCGGTGATCCATGCCGCTATAACATGCTGGAGCCTGTGGCGAAGCGGATGGGCCTGGACACAAAGAGCCCAACTTCTCTTTGGAAAGACTTCGCTATGGTTGAAATAAACCTGGCAGTGCTACATAGCTTTCAGGAAGCCTCAGTTACCATCATTGATCACCACAGTTGTTCAGACTCTTTCTTGAAACACGTCGAGAACGAGGTTAAATTCCGTGGAGGATGTCCAGGGGATTGGGTATGGATCGTTCCTCCGATGTCAGGCAGCGCTACTGGTGTTTTTCATCAGGAAATGTTAAACTACTACTTGAAGCCAAGTTACGAGTATCAGGACGATCCTGGCTAAGGTAGTCAAATTCACTGCCAAAATGATGAGCAAAGCACTCGCTAAGCGACAGAAAGCTGTCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29498	Nitric oxide synthase 1 OS=Ovis aries OX=9940 GN=NOS1 PE=2 SV=3
Q9Z0J4	Nitric oxide synthase 1 OS=Mus musculus OX=10090 GN=Nos1 PE=1 SV=1
P29476	Nitric oxide synthase 1 OS=Rattus norvegicus OX=10116 GN=Nos1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02898 all species →	NO_synthase	Nitric oxide synthase, oxygenase domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044940 all species →	Homologous_superfamily	Nitric oxide synthase, domain 2 superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR044943 all species →	Homologous_superfamily	Nitric oxide synthase, domain 1 superfamily	Interproscan
IPR004030 all species →	Domain	Nitric oxide synthase, N-terminal	Interproscan
IPR050607 all species →	Family	Nitric Oxide Synthase (NOS)	Interproscan
IPR036119 all species →	Homologous_superfamily	Nitric oxide synthase, N-terminal domain superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR044944 all species →	Homologous_superfamily	Nitric oxide synthase, domain 3 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43410 all species →	NITRIC OXIDE SYNTHASE OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004517 all species →	Molecular Function	nitric-oxide synthase activity	Interproscan
GO:0006809 all species →	Biological Process	nitric oxide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08832	SRPK3, STK23; serine/threonine-protein kinase SRPK3	EC:2.7.11.1	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.