Gene detail

Detailed information of amic_s0161.g41.t2 in Acropora microphthalma

Genomic Location: sc0000161_pilon:411996...421530
NR annotation: XP_029190735.2, LOW QUALITY PROTEIN: nitric oxide synthase, endothelial-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0161.g41.t2

CTCTTCTCGTACGCTTTTGACCCAAAGGTTATGTGCATGGAGGAGTATTCGTACCCCGACATAGAAAATGAACAGCTTGTTCTTATCGTGACCAGCACTTTTGGAAATGGAGATCCACCCGAGAATGGAGAGGGATTCGCTCGATATCTGTACGAGCTTCGACATCCATCAGATAGTGTTGAAACTTCTCACAAGAAATTATGGCAGCTCAGCAGTCTCTTGATTCAAAAAGAGAGACAAAAGCTCCTTAATTTGAAGAATGACAGTCAGCCTTTGGCTAATCTCAGGTACTCTGTCTTCGGCCTGGGGTCAAAAGCCTACCCAAACTTCTGTGCGTTTGCCCGCTCGTTGGATAATATCATTCAGGAACTTGGAGGGGAGCCTGTTCTAAAAATGGGAGAAGGAGATGAGTTGTGCGGGCAAGAGGAGGCATTCAAAGTCTGGGCCAAGGCGGTATTTCAGGCCGCCTGTGACTCGTTTTGCATTAATGATGAGGTTACCAAGGGAGCGACTGACTCCATGGACAGTGTTCAAAGTGGCTGGGTACCAGGCCGCTTTCGCCTCACTAAAGCTACGCCAGCAAATGATGGAAAAACTGAACAGCTTACTGAAGGTTTGTCCCATATTTGTGGTAAAACTGTCCGTACTGCGACTTTGATGTCTGTGAAAAATTTGCAGTCCACAGATTCAAGTCGGTCAACAATTCTAGTCAAATTCAAAACAAACGATCACGCTGAATTGCAGTATAGACCGGGAGATCACGTGGCTATTTTTCCAGCCAATCATCCTGACTTGGTGCAAACTTTGATCGACAAGCTGTCAGGTGACGTTGATCCAGATACACCGATTGCCATCGAAACATTACGGGAAACCAAAGGACTGTTCGGCAAATCCAAGGAATGGGAGACATTTGCACGTCTTCCTTCTCCAATCACCATACGCGAGGCGTTGGCCCGATACCTGGATATCACAAGTGTGCCCTCTCCACAGCTTATTCAATTTCTAGCTTCAATCGCGACTATCGCAGAAGATAAGGAAATTTTGCAAGTTCTTGCCGAGGGAAAAAATCAATACGAGGACTGGAAATTTGAAAACGAATGCAACATTCTTGAAGTGCTTCAAGAACATTGCTCTCTTTCAGTTCCTGCTGATTTGTTGCTTACTCAGCTCCCGCTAATGCAACCGGTAAGGGTATTTTTTTAACACCTACATATAAAATGACCTCTAGAAAAATTCATCGCAAAAATGTGCCGCGCTTTTACTCTATTTCATCGTCTCCGGACCTCTGTCCTGGTGAAATACATCTCACAGTGGCTGTAGTTCATTATAACAAGAAAGGTGGAAAAGGTCCTTTGCATCGTGGTGTGTGCTCGACTTGGCTCAACAGATTACAACCTGGAGATGAGATACCCTGTTATGTCAGACAAGCCCATACCTTCCATATGCCTGAGGACACCACCGTCCCAATCATAATGGTGGGGCCTGGCACGGGCCTAGCTCCTTTCCGCAGCTTCTGGCAACAACGTCAGTATGACATCACCAACAAAGGTCATTATGGGCGTAGGGACAGTGGCGTCAATGAGTCCAATCCTCAACAACCGGACCTTGATACTGCAACCATCAAGTGCTTGAGCCCCGCTGTTAATAAATTGGGCTCCATGTCGCTATTTTTTGGATGCAGAAATTCCAAGCAAGACTGTATTCACAAGGACGAAATGTTGAAAGCTAAAGACGAAGGAGCGTTGACGGAAATTTTCTTTGCTTTCTCGCGCGAACCCGACGCACCGAAGAAATATGTCCAAGACATGTTGAAGGAAGAAGCATTTGACATTTGTGAAAAGTTGCTAAGCAAACAAGCCCACTTTTACGTGTGCGGTGATGTGAAAATGGCCGATGATGTTTGCAAGACTCTCCAGACACTCTTACAAGAGTACGCTGCTATGTCACAAGGAGAAGCACAAGAAACTGTCGACAAATTGAAGAGCACCGGACGGTATCATGAAGACATATTTGGAGTGACACTGAAAACACGAGAAGTTACCACGCGTATTCGATCAGCAGTCAAAAGATCACTCCATTTGCTATTCATAAAGAATCCGAAGAAAGTGATGCATCGCAGTGATACTACAATTGATTCTGATGCCAACCCAACTAGAGAAAACAAGGCTGAAGTGCGTCTAAAGAGAGCGGCATCTGCATTCTACTAAAGCCATGGACGTTGGATGGATAACGAAATGGCACTGATGCTTCAGACAATGAACAAATTAATTAGGGTTCGATCATTTTCCCGCTAAGATTTTTATTAACTGAAAGAAGTTGCCCTTCTCAACTCCCATTGCAACAAGTGAAGAGTCCTTCCTTCTTGTTGTTTACTGTTGTTATTATTTGCTATTTCGGGAGACGGACTGGTGGCGTAGCTAAAAGAGCTTTGGGTTAGGAATTTAGAGTGCTTGTCAACCGACAACTGACAACTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29475	Nitric oxide synthase 1 OS=Homo sapiens OX=9606 GN=NOS1 PE=1 SV=2
Q9Z0J4	Nitric oxide synthase 1 OS=Mus musculus OX=10090 GN=Nos1 PE=1 SV=1
P29476	Nitric oxide synthase 1 OS=Rattus norvegicus OX=10116 GN=Nos1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan
PF00258 all species →	Flavodoxin_1	Flavodoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050607 all species →	Family	Nitric Oxide Synthase (NOS)	Interproscan
IPR029039 all species →	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR008254 all species →	Domain	Flavodoxin/nitric oxide synthase	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan
IPR001094 all species →	Domain	Flavodoxin-like	Interproscan
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43410 all species →	NITRIC OXIDE SYNTHASE OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0010181 all species →	Molecular Function	FMN binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0161.g41.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.