Gene detail

Detailed information of amic_s0164.g4.t1 in Acropora microphthalma

Genomic Location: sc0000164_pilon:101506...111328
NR annotation: XP_029201471.2, exonuclease 3'-5' domain-containing protein 2-like [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0164.g4.t1

GTACTAGTTAACCCTTTTTATTGTAGCGAACAGCTGAGATTTCACTTATTTTTAGGGTACAATCCGATTCAGAAATCTTTGTTTTTTTGCGGAAAACAGTTCTGTGCAGAAAAAAATTGTATTTATTGAGTGACTGATTTCAATACAAGTTATGTCACTCACTAAATTACTACTTTGAGTTCATTAGCATACCACAAAGGTGGCTTATTTGAGTATCCCAAGTTGTCGGAAGATGAGTCTTGATGCCTTGGCCAAGAGAATATTGGGAGTTAAATTGAATAAATCTTGGAGAATTCAATGCAGCAATTGGGAAGAAGAAAAGCTCAGCACTCAACAGATTGAATATGCAATGAATGATGCTTTGGTTGCAATCCAAATATTCCTTAGGTTCGTGAAAGAAAAAGCCAAGCAAAGCTCAGATTCAGAGGATTATTCCTCTGGCAAAGAGATGCTCAGTTCCAGAGATGTTTACAATCCCGATGAAGGCCAAGAAGCAGCAGGAGATGTGGATAAACATCATGACAGCCCAACATCTGAATTTGCAGGGAACAGAAGCCCTAAGCAGGAGGAAAGATCAATTGTCAGAACTGATTATTATGAAACAACAGTAGATCTCAGTAAGTTTGAATCTGATGAGATGGCAGGATACCTTTCAAGAGAGGAGGTTATCAGTCTCATTTCTGACTCTTACTTTACTCAAAGAGCAGGTTTGCTCTGCGAGGGTGTGATTGAGATGGCATTCAAAGGAAGAAAAGAGGTTCCCTCAAAGAAGAAGAGCAGTACCGGTAATCCTTGCAGTACAGGACAATCAAACACGTCTTCAATAAATGCGGCAACAAGAAAATCACCTCTTTACGAGGAGTGCATGTTAACAGCACCAGATGGATCAAGGCTTTGTAGTGTGAAACGTGACAAAGCAGATTGGTACATTGGCAAAGGGTTAGGACACCTAACAAACCTTGATCCCTACACTGTTCAGCTAAATTTTGAACCCGCAGGTAGACCAGGCACCGAAGACTATTACCAGAATGTCAAAAAAAATATCTGTGTTGTGTGTGGAAGTGATGAGAGTTTTATGAAGAAGAATGTCGTTCCCCATGATTATCGTCGCTTTTTTAATTCTGCGCTAAAAGATCACCGTTCACATGATATCCTGCTGACTTGCCCACGGTGTCATTCCTTGGCAAATTCCTTCGATGACCAATTAAGAAAGGAATTGGCAATCAAGTATAATGCTCCATTGGGAAATGTGTCTCGTCTTGTCGAAGATCCAAAGCTCAGGAAAGTTAAATCGGCTGCAAAGGCGTTAAGTCGTGCTGGTAACAAAATTCCAGAAGATAGACGCCAGGAACTCTCGCTTGACGTGCAGAAACACTTCAGTGCTTCTGCTCTGACTCCAGAGATGATCTCGCATGCAGCAACTATGGAAACCACCAAGGAAAATGCCAACTTTGTGTCTCACGGGTCTGAAGTTGTGAAAAGAGTTTCCGCGGAAGGTAAACTAGAGGAATTTGAGAAAATGTGGAGGAAACACTTTGTTGAAACGATGCAGCCAAAGTTTCTTCCGCCCTTGTGGTCAGTGGATCATTGTAATGAAATTTATTTTGAAAGGAAAATTGAGAGACTGTCCGGACCATTTGTAGTGGCACATTAGTTTTTTTTAGTTAGGTTATACTTAAAAtaaaggaacagaggtcacgccatctgagtggaactccactagcgtaaaaaatgctttaaagctattgTGAACGAAAAGAAACGTTTACGTTATAAAACTGAAGCTTTCGCTAAAGCTTAAATGCGCCCTATCACTGTACACagttatggcgtttttatgacatcgctggttaaaacaaaacttggtacttaattcaaaagcaataacattccttctaaagaaaaaaaaaaTGCAAGGAAAACTATTACATATTAGAATTTTGGGGATTTTCGGAATAAGTCACCTTTAAAGTTAATATTGACCTATTTGTCCAAGTTTAATCCTTTTCCATCCTTATCTTCTTTAGAAATAGACAAAAAAAAAAACAGCGTGCTAAACAAGTTCCTATGAAAGAAACTTAAACATTTAGATAGTTTATATTTCGATTGATTCTACAAAGCATTAATTTTATAACCCGAGTAGAATTCCACTCAGATGGCGTGAGCCTGCCCTACTTTGCAAggaaaagctattcatattttaactttgggaatttctggaatacatcacgtccaaacctgaaaacattgctaattttttgAAGATGCCAAAAATTGACTTCTGTGTACTAACAGAGCTTTTGTTTTAAAGTGTTTGTTATTTTAGGTTATTTTacctcaattgtccgcattccttgtcaaaggcgatattcaagttcattcaaagggcgaggggacatcttgtgatgcttattacaatagtcgtgtatttaattgcttgcaatACATTGCATTTTTTTTTCAGGATTTTGTGTGAGTGAATGAAAATGACCAAAACATTTACTGAACATTTAGAAAAGTTTAAAATTTCAGTTATTTTGAGAAGTAGTTGTTAATGAGTGTTCCATTGCAGTGAATGGACCTTTTTCGTGTTCTGCCCTTAAAAAAGGCTTTGCACGGCTAGCTTCCCATTCAGTGTGAGGCGAAAAGTTTGTATATATTTCCCTGGGTCTTAAGGCGGCCCACAGTGTGTAAGGACGTAGTTAAATTTGTGATGTTTTTTTTTTTCCTCATCTTAAAATATTTCTGGGTATTTTTCCAAAAGGTTACTTAGTTTCAATGCCAGCTTCAAATTGAAAACTGTTCAGTGCACGGATCTCTCTGCCTCCTTTAAATCaatagcgagctttagcgagcggcacgagggcaacgacaaggaaaacatcatttgaagagaaatatttgcacaatcgtgactattttactgttatcacatattgtatgaactctgcaattgtggtgaagtgagctacaaccggcctgcaaagagcgctgtagtagtgaagactgataatttttttgtcgtctgttccagttttcgtcgaaattaaatatgtggtaatttcacgttgttgttttgcagtgcacggcacggagttgtcccaaagtccgttccgcacgtgctacactcttatttttctccattcgaccaatcaaattgatgatttgtggcgttgtcatgaccgctgcccttgtggctgcaaaagcttgccaatTAGTGGTGGATACAGAATTCGTGAACCAAACACGCATACTCTAGACTTTACTCCAGAAAGAATTGACATGAAGTAGATTTGTACGATGGTAAAACTTTTTTCCTCAGCATGAGAAAGTATTTCGAGACACAGCTATTGACATTTGCATGTGAACCCGCCTTTACATAAGTTTTATTTCTCTCGTGTTGTTGTTGCAATTTGTTGATACCCCATTCGTATACCTTCCATTGAAAAATAGTACCCCTTTAATTTCACAAACCTACTTAAAAACGCCCGTCTTGTCAATAAATCACTAAACtcttg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NVH0	Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens OX=9606 GN=EXD2 PE=1 SV=2
Q8VEG4	Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus OX=10090 GN=Exd2 PE=1 SV=2
Q9VGN7	Exonuclease 3'-5' domain-containing protein 2 OS=Drosophila melanogaster OX=7227 GN=Exd2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002464 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01612 all species →	DNA_pol_A_exo1	3'-5' exonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002562 all species →	Domain	3'-5' exonuclease domain	Interproscan
IPR045092 all species →	Family	Exosome complex exonuclease Rrp6-like	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12124 all species →	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0000175 all species →	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0000176 all species →	Cellular Component	nuclear exosome (RNase complex)	Interproscan
GO:0000467 all species →	Biological Process	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003727 all species →	Molecular Function	single-stranded RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0071035 all species →	Biological Process	nuclear polyadenylation-dependent rRNA catabolic process	Interproscan
GO:0071036 all species →	Biological Process	nuclear polyadenylation-dependent snoRNA catabolic process	Interproscan
GO:0071037 all species →	Biological Process	nuclear polyadenylation-dependent snRNA catabolic process	Interproscan
GO:0071038 all species →	Biological Process	TRAMP-dependent tRNA surveillance pathway	Interproscan
GO:0071039 all species →	Biological Process	nuclear polyadenylation-dependent CUT catabolic process	Interproscan
GO:0071040 all species →	Biological Process	nuclear polyadenylation-dependent antisense transcript catabolic process	Interproscan
GO:0071044 all species →	Biological Process	histone mRNA catabolic process	Interproscan
GO:0071051 all species →	Biological Process	poly(A)-dependent snoRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0164.g4.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.