Detailed information of amic_s0165.g55.t1 in Acropora microphthalma

Genomic Location: sc0000165_pilon:1470221...1512278
NR annotation: XP_015748796.1, PREDICTED: LOW QUALITY PROTEIN: sortilin-related receptor-like [Acropora digitifera]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q13332Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens OX=9606 GN=PTPRS PE=1 SV=3
P98156Very low-density lipoprotein receptor OS=Mus musculus OX=10090 GN=Vldlr PE=1 SV=1
P98166Very low-density lipoprotein receptor OS=Rattus norvegicus OX=10116 GN=Vldlr PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000636 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00041
all species →
fn3Fibronectin type III domainDomainInterproscan
PF00057
all species →
Ldl_recept_aLow-density lipoprotein receptor domain class ARepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002172
all species →
RepeatLow-density lipoprotein (LDL) receptor class A repeatInterproscan
IPR003961
all species →
DomainFibronectin type IIIInterproscan
IPR036055
all species →
Homologous_superfamilyLDL receptor-like superfamilyInterproscan
IPR013783
all species →
Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR023415
all species →
Conserved_siteLow-density lipoprotein (LDL) receptor class A, conserved siteInterproscan
IPR036116
all species →
Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR050685
all species →
FamilyLow-density lipoprotein receptorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24270
all species →
LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for amic_s0165.g55.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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