Gene detail

Detailed information of amic_s0165.g55.t2 in Acropora microphthalma

Genomic Location: sc0000165_pilon:1438661...1487508
NR annotation: XP_029186888.2, sortilin-related receptor-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0165.g55.t2

ATGAAGAGAGGCGTGCAGGAAATAAGGTTGCTTTTAACCTTTTTCTTGTTCTCAACGTTTGGAATATCAAAGCTAGATGCCATCAAGAAACCCAGAGAGAGGCATTTATTCGTTCAAAGGCGATCGCCACTGCCAGGTTCTCCAACTAAGCTCCAAACAGTTGAAAGAGAAAGCGTCGACAACGTTGGTTCTAGTGAAGAACAAGATCCTCACAAAATCCTATCCAGGGTTCGACGATCAGTAAATCCGGATCTATCACCTAGAGTGAAAGAGTTCAAGCTGAACGACAGTCACTACCTGGCATATGTGCACTGGGCAGGGGACCACAGGGATACCATTGTTGTTTTGACACGAGATTTCACACCCAATTTGCACAGCAATAGTCATGTGTGGGTCTCTAAGGACTATGGGCAAAGCTTCACCAACCTTACGAACATGTTCAGGATACCTGGTCGCAGCAATGCTTACGCTCGAGTGGACATGTTTTATTCATCTCCTGTGGACAAGAGCAGGTACCTTTTGGTCGACACTCTGCACAACGTGATGTTCAGCACAATTGATGACTTTGCAACAGTTATCACAGTTTCCCTTTCTTTTTCACCGGATGAAATCCTCTACCATCCAAGCAGCAGTAATGTTGTTTTGGCCTATGATGAGTCGGCATCCAAGCTTTACTACTCCACAGACTTTGGTTTCAGATGGACTTTGAAGGAGGAGAATGTGCGTTCATATTATTGGGGTATACCACCATGGGACAATGCTAACACACTTTACATTGAGCGTGAAGAAATTTCAGGTGGCCTTTCCAATATTGTCAAAACAGACTATTTCTCCACCCTTGCAACAAGTGTCATTGAGAAAGTGCATGAATTTAATATTATCGACAACTACATGTTTGCTTTAGTGCCGCAATCTGGATCTGACTCCATGACTTTGAAGGTGTCTCTGAATCGTTCATCATTCCATTCTGCACAGATTCCGACAAGTAATCCAACAAGGGATTTCTTCATTGCGGATGCATCAGAAAACCAGGTTTTCCTGGCTGTCGCTCACAGTGCCAGCACAACTCACCTGTACATTTCAGACACTACTGGGATTAAGTACAGCTTGTCCTTGGAAAGGGTGCTTTATTTCTCACACAACACATCTTCTCCATGGCTGAGGCGATACATACATGACAGATTTGTTGACCTGCACAAAGTTGACGGACTCCGAGGGGTGTATATTGCTAGTCAGCTCACTGTGGGAACTATTGGACGAAGGCACATCTTGTCAAAGATAACATTTGACAAGGGTGGGGTGTGGCAGTCAATTGCAGCTCCTAAGACGGACAATAATGGAAGGCCTTTGAATTGTAATCTACCAAACTGCTCACTGCACCTTTCGCAAAAATTTGGCTCATACTACCGCTACACTCGTTTCAGTCCCATGAGATCGTGGAAGGAAGCCCCTGGTGTTATCATGGCGACagGTTCTTATGGTGTGAGTTTGCGGAGAAATGCCGATATTTTCCTTTCTGCTGATGGTGGGCTGAGCTGGCATATGATATTACATGCTCCCTGGTGGTGGTATAATGTTGGTGATCATGGTGGAATTTTCATTGCTGTTCCAAGATCCAGACTCACAAACCTGATTTTGTACATGTATTGGACAGACTGGGGAAGCAGTGCTCGCATTGAGAGAGCCTTCATGTCTGGTACAGGTCGAAGGTCAATTATCTCGACCTCTTTGCAGTGGCCCAATGGTCTTGCCATTGATTTTAGGCAGTTAAAACTTTATTGGACCGATGCTGGTTATGACAAAATCGAGAGAAGCAACTTGGATGGCAGCTATCGCCGGACAATCACCAGAACAGGCTTACCGCACCCGTACTCAATATCAATCTATGAAGAGTCCATGTACTGGGATGACTGGTCCACGCTTTCCATACAGAAGGCAAACAAACGAGATGGTGGATCTCGGCAAACCATCAAATCGCACATACGTGGTCTCATGGATGTCAAAATTTTCCACCAGGATGTGCAAACTGGTAACAACAGTTGCTCCAGGCTAAAACCTTGTTCGCACCTCTGTTTGGCTGTGGGCAATGGATTTTCTTGTTCCTGCCCTGATAACATGGTTTCGGTGATATCTGCTGCTGGGATTGTGAGATGTGAATGCTCGCCTGGGGAACACATGGATCCCGTTACCAAGGAATGTAAAACACTGTCTGGCACGTGTAAAACAAACGAGTTCAAGTGTACGAGTGGGGCCTGCATCCCTCTTCACTGGAGGTGCGATCACGACAATGATTGCGGAGACAACTCTGATGAGCAAAATTGCCCTCGTTACGTGACTCAAGGGAACCAACAATCTCGACACAGATACGTTGGAAGAAGGCCAAACCTTGTCGCCATTAATATGCAAATGTTTGTTTTTGTAGCTTACACGACGTGTCAATCAGATCAATTCAGATGCGATAATGGCCGTTGTATTTCCGCCTCTTGGAGGTGTGATCATGATAATGATTGCCATGATAACTCGGACGAGAGAAATTGCTCGTATGCTACATGTGGGGCAAACCATTTCACTTGTGCTAACAGACGTTGTATTCCGAGGTCATGGGTGTGTGACTCTGAAAATGACTGTGGTGATAACTCAGATGAAAGAGGTTGCACTCCAGCTCCTACTACCACGCGCCCGCCTGCTAATTGTTCAAGCTTTCAGTTTGCTTGTCATAATGGCCGCTGCATTCTCAGTCGATGGTACTGTGATGGGGACAACGATTGTGGAGATAGAAGCGATGAACCATATGGTTGCAGATCTTCAAGAACTTGTTCATCCACACAGTTTACGTGTAGGAGCGGGCATTGCATTCCAGCATCATGGCGCTGTGATGGTGATAATGACTGCGGTGACTACTCTGACGAAAGGGGCTGCTCATATACGACTCGACCCACTCCCTCCACCGCACCTTGGACTCGGAGAACAAGCTGTGGATCCTATGAATACACCTGCAACAATGGTTACTGTGTTTACTCTTGGGATGTGTGTGATGGAACGGACGATTGTGGCGACTATTCAGATGAGCTCTATTGCGGAACAACAGCTGCCCCAAGCATGACGCCATATACTCGAAGGGCATGCCATTTCTGGGAGTTCGCTTGTTCCAATGGAAGATGTATCCGTCGGAACTGGAGATGTAACGGATACGATAATTGTGGCGACGGAAGTGACGAAGTAGGATGCGCTGCCACTACGATACCAACAACTCGCGTAACAACACTGCCGCCAAGATGCCCTTCTGGGTGGCTTCGGTGCTCAAACGATCCTTCCAAGATCTGCATCAGAGCTTCCTGGTTGTGTGATGGAATTAGAAATTGCCCTAACGGATGGGACGAGTTGCCAGGGAACTGCGGCCGCCGTACAACATCAAGACCCTTTTGTTCAAGCAGTGAATACCAGTGTGCTTATGGCGGCTGTGTTCCGCGCTATTCAGTATGCGATGGAATCAGCGAATGCTACGATGGATCGGACGAAGTTGGCTGTGTTACCCCAAGCGCGTGCACTGGATTCACTTGTGACAGAAACCATTGTTTATCAAGTTCCAAAATTTGCGATGGTATACCAGACTGTCAAGATGGCGTTGATGAAAAGCATTGCAAAGATAGTTTGAAAGTTCAAAATGTCCGTGTAACAAACATTAACTCCACAAGTGTCACTCTTCAATGGAATCCGATTACCGTACATCCAGCGAACGTCACCTTCCCAGGATACCGTGTTTCCCACAGGTCTGTCTCTCTTCACAATGTACATGATGTTGGAGCGTGGCAGTCGTTTGATACAGGCTTGGTTACCTATGCGAGTGTGTCTGGCCTTCAGCCCTGCTCAGAATACGAGTTCAGAGTGCAAGTGTTGCTTCAGGGATTAAAGCCAGGCCCTTATTCCGATGTAGTTCAGAGAGTAACCACGTTTTTTCCCGTTACAGCCTCTGCCCCAAGAAACGTGCAACATGTATTGATAGGACGGGACTCCGTTCGGTTGAAATGGGAAGCGCCCGCAACTTACTGCTCTGTCATCACTAACTACAAGGTTCTGTTCAAGATTCACGGCCCGGGTGATTTTACGCCTGTAGAAGTTGGTAACGTTCTGTCTTATGTACTACGACTCAGTGGGGGACGTAAATATGACATCAAGGTTACAGCTCACAGCGCAGAAGGTGACGGGGCGCCGTCAGCGGTTCAAACTGTAGTGATTTTGACCGACCCTCCTTCATGTACGGTTTGTGCTCTCTAG

Transcript

amic_s0165.g55.t2

GTCACTTCTTCACGTGACTTGATAATTTCGTACCAGTGTATCGCAAGTCTAGATGGTAAATTTTACAGATAATCGTCGAAAATGAAGAGAGGCGTGCAGGAAATAAGGTTGCTTTTAACCTTTTTCTTGTTCTCAACGTTTGGAATATCAAAGCTAGATGCCATCAAGAAACCCAGAGAGAGGCATTTATTCGTTCAAAGGCGATCGCCACTGCCAGGTTCTCCAACTAAGCTCCAAACAGTTGAAAGAGAAAGCGTCGACAACGTTGGTTCTAGTGAAGAACAAGATCCTCACAAAATCCTATCCAGGGTTCGACGATCAGTAAATCCGGATCTATCACCTAGAGTGAAAGAGTTCAAGCTGAACGACAGTCACTACCTGGCATATGTGCACTGGGCAGGGGACCACAGGGATACCATTGTTGTTTTGACACGAGATTTCACACCCAATTTGCACAGCAATAGTCATGTGTGGGTCTCTAAGGACTATGGGCAAAGCTTCACCAACCTTACGAACATGTTCAGGATACCTGGTCGCAGCAATGCTTACGCTCGAGTGGACATGTTTTATTCATCTCCTGTGGACAAGAGCAGGTACCTTTTGGTCGACACTCTGCACAACGTGATGTTCAGCACAATTGATGACTTTGCAACAGTTATCACAGTTTCCCTTTCTTTTTCACCGGATGAAATCCTCTACCATCCAAGCAGCAGTAATGTTGTTTTGGCCTATGATGAGTCGGCATCCAAGCTTTACTACTCCACAGACTTTGGTTTCAGATGGACTTTGAAGGAGGAGAATGTGCGTTCATATTATTGGGGTATACCACCATGGGACAATGCTAACACACTTTACATTGAGCGTGAAGAAATTTCAGGTGGCCTTTCCAATATTGTCAAAACAGACTATTTCTCCACCCTTGCAACAAGTGTCATTGAGAAAGTGCATGAATTTAATATTATCGACAACTACATGTTTGCTTTAGTGCCGCAATCTGGATCTGACTCCATGACTTTGAAGGTGTCTCTGAATCGTTCATCATTCCATTCTGCACAGATTCCGACAAGTAATCCAACAAGGGATTTCTTCATTGCGGATGCATCAGAAAACCAGGTTTTCCTGGCTGTCGCTCACAGTGCCAGCACAACTCACCTGTACATTTCAGACACTACTGGGATTAAGTACAGCTTGTCCTTGGAAAGGGTGCTTTATTTCTCACACAACACATCTTCTCCATGGCTGAGGCGATACATACATGACAGATTTGTTGACCTGCACAAAGTTGACGGACTCCGAGGGGTGTATATTGCTAGTCAGCTCACTGTGGGAACTATTGGACGAAGGCACATCTTGTCAAAGATAACATTTGACAAGGGTGGGGTGTGGCAGTCAATTGCAGCTCCTAAGACGGACAATAATGGAAGGCCTTTGAATTGTAATCTACCAAACTGCTCACTGCACCTTTCGCAAAAATTTGGCTCATACTACCGCTACACTCGTTTCAGTCCCATGAGATCGTGGAAGGAAGCCCCTGGTGTTATCATGGCGACagGTTCTTATGGTGTGAGTTTGCGGAGAAATGCCGATATTTTCCTTTCTGCTGATGGTGGGCTGAGCTGGCATATGATATTACATGCTCCCTGGTGGTGGTATAATGTTGGTGATCATGGTGGAATTTTCATTGCTGTTCCAAGATCCAGACTCACAAACCTGATTTTGTACATGTATTGGACAGACTGGGGAAGCAGTGCTCGCATTGAGAGAGCCTTCATGTCTGGTACAGGTCGAAGGTCAATTATCTCGACCTCTTTGCAGTGGCCCAATGGTCTTGCCATTGATTTTAGGCAGTTAAAACTTTATTGGACCGATGCTGGTTATGACAAAATCGAGAGAAGCAACTTGGATGGCAGCTATCGCCGGACAATCACCAGAACAGGCTTACCGCACCCGTACTCAATATCAATCTATGAAGAGTCCATGTACTGGGATGACTGGTCCACGCTTTCCATACAGAAGGCAAACAAACGAGATGGTGGATCTCGGCAAACCATCAAATCGCACATACGTGGTCTCATGGATGTCAAAATTTTCCACCAGGATGTGCAAACTGGTAACAACAGTTGCTCCAGGCTAAAACCTTGTTCGCACCTCTGTTTGGCTGTGGGCAATGGATTTTCTTGTTCCTGCCCTGATAACATGGTTTCGGTGATATCTGCTGCTGGGATTGTGAGATGTGAATGCTCGCCTGGGGAACACATGGATCCCGTTACCAAGGAATGTAAAACACTGTCTGGCACGTGTAAAACAAACGAGTTCAAGTGTACGAGTGGGGCCTGCATCCCTCTTCACTGGAGGTGCGATCACGACAATGATTGCGGAGACAACTCTGATGAGCAAAATTGCCCTCGTTACGTGACTCAAGGGAACCAACAATCTCGACACAGATACGTTGGAAGAAGGCCAAACCTTGTCGCCATTAATATGCAAATGTTTGTTTTTGTAGCTTACACGACGTGTCAATCAGATCAATTCAGATGCGATAATGGCCGTTGTATTTCCGCCTCTTGGAGGTGTGATCATGATAATGATTGCCATGATAACTCGGACGAGAGAAATTGCTCGTATGCTACATGTGGGGCAAACCATTTCACTTGTGCTAACAGACGTTGTATTCCGAGGTCATGGGTGTGTGACTCTGAAAATGACTGTGGTGATAACTCAGATGAAAGAGGTTGCACTCCAGCTCCTACTACCACGCGCCCGCCTGCTAATTGTTCAAGCTTTCAGTTTGCTTGTCATAATGGCCGCTGCATTCTCAGTCGATGGTACTGTGATGGGGACAACGATTGTGGAGATAGAAGCGATGAACCATATGGTTGCAGATCTTCAAGAACTTGTTCATCCACACAGTTTACGTGTAGGAGCGGGCATTGCATTCCAGCATCATGGCGCTGTGATGGTGATAATGACTGCGGTGACTACTCTGACGAAAGGGGCTGCTCATATACGACTCGACCCACTCCCTCCACCGCACCTTGGACTCGGAGAACAAGCTGTGGATCCTATGAATACACCTGCAACAATGGTTACTGTGTTTACTCTTGGGATGTGTGTGATGGAACGGACGATTGTGGCGACTATTCAGATGAGCTCTATTGCGGAACAACAGCTGCCCCAAGCATGACGCCATATACTCGAAGGGCATGCCATTTCTGGGAGTTCGCTTGTTCCAATGGAAGATGTATCCGTCGGAACTGGAGATGTAACGGATACGATAATTGTGGCGACGGAAGTGACGAAGTAGGATGCGCTGCCACTACGATACCAACAACTCGCGTAACAACACTGCCGCCAAGATGCCCTTCTGGGTGGCTTCGGTGCTCAAACGATCCTTCCAAGATCTGCATCAGAGCTTCCTGGTTGTGTGATGGAATTAGAAATTGCCCTAACGGATGGGACGAGTTGCCAGGGAACTGCGGCCGCCGTACAACATCAAGACCCTTTTGTTCAAGCAGTGAATACCAGTGTGCTTATGGCGGCTGTGTTCCGCGCTATTCAGTATGCGATGGAATCAGCGAATGCTACGATGGATCGGACGAAGTTGGCTGTGTTACCCCAAGCGCGTGCACTGGATTCACTTGTGACAGAAACCATTGTTTATCAAGTTCCAAAATTTGCGATGGTATACCAGACTGTCAAGATGGCGTTGATGAAAAGCATTGCAAAGATAGTTTGAAAGTTCAAAATGTCCGTGTAACAAACATTAACTCCACAAGTGTCACTCTTCAATGGAATCCGATTACCGTACATCCAGCGAACGTCACCTTCCCAGGATACCGTGTTTCCCACAGGTCTGTCTCTCTTCACAATGTACATGATGTTGGAGCGTGGCAGTCGTTTGATACAGGCTTGGTTACCTATGCGAGTGTGTCTGGCCTTCAGCCCTGCTCAGAATACGAGTTCAGAGTGCAAGTGTTGCTTCAGGGATTAAAGCCAGGCCCTTATTCCGATGTAGTTCAGAGAGTAACCACGTTTTTTCCCGTTACAGCCTCTGCCCCAAGAAACGTGCAACATGTATTGATAGGACGGGACTCCGTTCGGTTGAAATGGGAAGCGCCCGCAACTTACTGCTCTGTCATCACTAACTACAAGGTTCTGTTCAAGATTCACGGCCCGGGTGATTTTACGCCTGTAGAAGTTGGTAACGTTCTGTCTTATGTACTACGACTCAGTGGGGGACGTAAATATGACATCAAGGTTACAGCTCACAGCGCAGAAGGTGACGGGGCGCCGTCAGCGGTTCAAACTGTAGTGATTTTGACCGACCCTCCTTCATGTACGGTTTGTGCTCTCTAGGGTGTTGAGTCCAGGATTCAAGTAATTAAATACGTGCTGACTTCACAAAGCATCACCGTGTTAAGTATCCCCTTTGGACTTTATTTAGTGGATGAAACATGAGCGAGAGATCTGTATGGGCGTTTAGAATGGCGAGCCGAAGCAGACTCATTCGGACTCGAATACTTGTTAATTGGAACATGCATTTTAATAAAAAGAGATCTTTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95209	Sortilin-related receptor OS=Oryctolagus cuniculus OX=9986 GN=SORL1 PE=1 SV=1
O88307	Sortilin-related receptor OS=Mus musculus OX=10090 GN=Sorl1 PE=1 SV=3
P0DSP1	Sortilin-related receptor OS=Rattus norvegicus OX=10116 GN=Sorl1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058 all species →	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan
PF15902 all species →	Sortilin-Vps10	Sortilin, neurotensin receptor 3,	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000033 all species →	Repeat	LDLR class B repeat	Interproscan
IPR006581 all species →	Domain	VPS10	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050685 all species →	Family	Low-density lipoprotein receptor	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR031778 all species →	Domain	Sortilin, N-terminal	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270 all species →	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24498	SORL1; sortilin-related receptor	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.