Gene detail

Detailed information of amic_s0168.g12.t1 in Acropora microphthalma

Genomic Location: sc0000168_pilon:123386...135612
NR annotation: XP_029213367.1, integrator complex subunit 9 homolog isoform X1 [Acropora millepora]
Species abbreviation AMICR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0168.g12.t1

ATGAAACTGTATTCGTTAGGTCGAAGAAGCACGGCGCCATGCATGGTTCTTCAGTTCAAAGAAACGACGGTGATGTTGGATTGCTCCCTAGACATGTCAACTTTGCAGCATTTTACTCCTCTGTCTTTGGTAAACGATGAGAACACAAGCCACCTGAAACTGTGGACCACACGGGAACTACAGGATATTGAAGGATTTTCCTCCCAGAATAATTTGAAGGAAATAGCTGGCAAGGTTTTTATTGAAGCCCAACCAGAATGCTGTCCTCCAGAGGATTGTTTATTAGATTTCTCCACCATAGATATCATTCTTATATCTAACTATCATTTTATGCTTGCACTTCCATATATAACACAGCATTCAGGTTTCAAAGGAAAAATTTATGCAACAGAGCCAACAATTCAGATGGGAAGGGAGCTGATGCTAGAGATGGTGGTATATGCAGAACGTGTTCCAAGGATAAGCAAAGGAGAAATGTGGCGAGAGAGAGAGGTTCTGAGATGTCTTCCTTCCCCTCTTTGTGACTTAAAAGGTGCAAAATCATGGAGACCACTTTACAGCAAGCATGATGTTAAGGCTGCAATATCAAAGATTCAGAACGTTGGATATTCTGAAAGAATAGATTTGTATGGTATTCTTAAGCTGACTGCCCTTAGTTCCGGGTTTTGTGTGGGAAGCTGTAACTGGGTCATTGAGTCTGACTATGAAAAGGTCAGCTATGTCTCTTGTTCTTCAACATTTACCACTCACCCTCTGCCAATGGATCAATCCTTACTTAAAAGCAGTGATGCCTTGATACTTACTGGGGTCACGGAAGCACCCACTGCAAATCCCGATGCAATGTTGGGAGACTTCTGTAATAACTTAGCTACTACATTGAAAAATGGAGGGAACGTTCTTGTGCCTTGTTGGCCTTCCGGAGTACTGTATGATCTCTTCGAGTGCTTGTACTCTTATATGGACAATGCCAGCTTGACGTCAATCCCAATCTATTTTATTTCACCCGTGGCAGACAGTTCCTTAGCATATTCAAATATCTTTGCTGAATGGCTTTGCCAAAGTAAGCAGAGCAAAGTTTATCTACCAGAAGCTCCCTTTCCGCATGCCGAGCTTGTGAAATCTGGCCGGCTTAAACATTTTCCAAGCATCCACGACGGATTAAACAGCTGTTTTAAGACACCGTGTGTCGTATTCGCAGGACACCCGTCTTTACGCTTTGGAGATGTGGTGCATTTTATTGAATTATGGGGGAAGTCAAGTGGCAACACCATTATATTCACAGAGCCGGAGTTTCCTTACCTTGAAGCCCTTGCACCGTTTCAACCTCTTGCAATGAAAGCATGCTACTGTCCAATCGATCCGAGGCTGAATTTTACGCAAGCAAACAAACTCATACGCGAACTCCAGCCAGGTCATCTCGCTATTCCAGAGGCGTACACCAGAGCACCGGATCTGTTACCACACAGAACGGACCTGATAATACAAGATACGGAATGTAAAATATCAACCTTCAGCTTTTTGGAAGCTTTGTCTCTGCCTGTTAGCCGGCAGTTTGAGAAAGTGGTTTTGTCAAACGAGTTGGCCAACAACCTTCACCCACAGGAAGTAAGACCTGGCATTGCAGTAGCTACAGTAACTGGTACCTTGGTTTCGAAAGACAACAGATATACACTCGAGCCATTGGAGCTTTCGGAAATTGACGTCGAGAAGCCACAGGAATCCAATGCCGCGGCAGAGCGACACACGGACAGGCAAAAATCATGTCATTTGTGGGGCAGTGTGATGGTAGAGGATCTCTTACAGTCACTAGCGAAGCGAGGCATCTGTGATGTACAAGTGGAGTCCAATCAGGGAGGACACACCCTTCATCTGGCTCAAGATGATGCCATGATTCAACTTGACGCGAGTGGAACTCACATTATCACGCATGGAAACGAGGCTTTAAGGATTAACATCCGGGACTCGTTACTTGAATGTGTGACGCAGTTTTAA

Transcript

amic_s0168.g12.t1

CTTTTTAAAATTTGAAGAAAATTTCAAAGGAAGCATGAAACTGTATTCGTTAGGTCGAAGAAGCACGGCGCCATGCATGGTTCTTCAGTTCAAAGAAACGACGGTGATGTTGGATTGCTCCCTAGACATGTCAACTTTGCAGCATTTTACTCCTCTGTCTTTGGTAAACGATGAGAACACAAGCCACCTGAAACTGTGGACCACACGGGAACTACAGGATATTGAAGGATTTTCCTCCCAGAATAATTTGAAGGAAATAGCTGGCAAGGTTTTTATTGAAGCCCAACCAGAATGCTGTCCTCCAGAGGATTGTTTATTAGATTTCTCCACCATAGATATCATTCTTATATCTAACTATCATTTTATGCTTGCACTTCCATATATAACACAGCATTCAGGTTTCAAAGGAAAAATTTATGCAACAGAGCCAACAATTCAGATGGGAAGGGAGCTGATGCTAGAGATGGTGGTATATGCAGAACGTGTTCCAAGGATAAGCAAAGGAGAAATGTGGCGAGAGAGAGAGGTTCTGAGATGTCTTCCTTCCCCTCTTTGTGACTTAAAAGGTGCAAAATCATGGAGACCACTTTACAGCAAGCATGATGTTAAGGCTGCAATATCAAAGATTCAGAACGTTGGATATTCTGAAAGAATAGATTTGTATGGTATTCTTAAGCTGACTGCCCTTAGTTCCGGGTTTTGTGTGGGAAGCTGTAACTGGGTCATTGAGTCTGACTATGAAAAGGTCAGCTATGTCTCTTGTTCTTCAACATTTACCACTCACCCTCTGCCAATGGATCAATCCTTACTTAAAAGCAGTGATGCCTTGATACTTACTGGGGTCACGGAAGCACCCACTGCAAATCCCGATGCAATGTTGGGAGACTTCTGTAATAACTTAGCTACTACATTGAAAAATGGAGGGAACGTTCTTGTGCCTTGTTGGCCTTCCGGAGTACTGTATGATCTCTTCGAGTGCTTGTACTCTTATATGGACAATGCCAGCTTGACGTCAATCCCAATCTATTTTATTTCACCCGTGGCAGACAGTTCCTTAGCATATTCAAATATCTTTGCTGAATGGCTTTGCCAAAGTAAGCAGAGCAAAGTTTATCTACCAGAAGCTCCCTTTCCGCATGCCGAGCTTGTGAAATCTGGCCGGCTTAAACATTTTCCAAGCATCCACGACGGATTAAACAGCTGTTTTAAGACACCGTGTGTCGTATTCGCAGGACACCCGTCTTTACGCTTTGGAGATGTGGTGCATTTTATTGAATTATGGGGGAAGTCAAGTGGCAACACCATTATATTCACAGAGCCGGAGTTTCCTTACCTTGAAGCCCTTGCACCGTTTCAACCTCTTGCAATGAAAGCATGCTACTGTCCAATCGATCCGAGGCTGAATTTTACGCAAGCAAACAAACTCATACGCGAACTCCAGCCAGGTCATCTCGCTATTCCAGAGGCGTACACCAGAGCACCGGATCTGTTACCACACAGAACGGACCTGATAATACAAGATACGGAATGTAAAATATCAACCTTCAGCTTTTTGGAAGCTTTGTCTCTGCCTGTTAGCCGGCAGTTTGAGAAAGTGGTTTTGTCAAACGAGTTGGCCAACAACCTTCACCCACAGGAAGTAAGACCTGGCATTGCAGTAGCTACAGTAACTGGTACCTTGGTTTCGAAAGACAACAGATATACACTCGAGCCATTGGAGCTTTCGGAAATTGACGTCGAGAAGCCACAGGAATCCAATGCCGCGGCAGAGCGACACACGGACAGGCAAAAATCATGTCATTTGTGGGGCAGTGTGATGGTAGAGGATCTCTTACAGTCACTAGCGAAGCGAGGCATCTGTGATGTACAAGTGGAGTCCAATCAGGGAGGACACACCCTTCATCTGGCTCAAGATGATGCCATGATTCAACTTGACGCGAGTGGAACTCACATTATCACGCATGGAAACGAGGCTTTAAGGATTAACATCCGGGACTCGTTACTTGAATGTGTGACGCAGTTTTAAGTTGGTAGCCATCGCAAGATTGATGCGTGGAGATTCGAGTGTCCCTGTTGAGAAACTTCAGTCGCGGAATTCACGACTGCATTTCCGAGTTTAAGCCTCTGTTCGCTCAACTCATGAGTTGCCAAAACAACGAATTTTGTAATGGTTGATATTGGTTGATCAACGGGTGATAAAAATAAAAAACAAGACTTGTAGTAGGATATTGCAAAGGTTTTCAATTTTCTCCGTTTGTAATTACACGCGTTTTGGAAAACAGGCCTGGCGTTGTTAAATTTTCGCGTGACTCCAAGTTCTAAATTCCAGTtatagataggacccggcgctcgctctgattggtcaaaaacctatggtttatcatagtataaaccatagagaaaacgtgctttattgtttttcactacattacctctatatcataaagcaaatgaagaagcctaagccgtgtattgcactgtgataaaatactgcggacatt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7SBF0	Integrator complex subunit 9 homolog OS=Nematostella vectensis OX=45351 GN=ints9 PE=3 SV=1
Q9NV88	Integrator complex subunit 9 OS=Homo sapiens OX=9606 GN=INTS9 PE=1 SV=2
Q2KJA6	Integrator complex subunit 9 OS=Bos taurus OX=9913 GN=INTS9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004036 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16661 all species →	Lactamase_B_6	Metallo-beta-lactamase superfamily domain	Domain	Interproscan
PF21382 all species →	IntS9_C	Integrator IntS9, C-terminal domain	Domain	Interproscan
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR001279 all species →	Domain	Metallo-beta-lactamase	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR027074 all species →	Family	Integrator complex subunit 9	Interproscan
IPR048660 all species →	Domain	Integrator complex subunit 9-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46094 all species →	INTEGRATOR COMPLEX SUBUNIT 9	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016180 all species →	Biological Process	snRNA processing	Interproscan
GO:0032039 all species →	Cellular Component	integrator complex	Interproscan
GO:0034472 all species →	Biological Process	snRNA 3'-end processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13146	INTS9; integrator complex subunit 9	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.