Detailed information of amic_s0168.g5.t1 in Acropora microphthalma

Genomic Location: sc0000168_pilon:56136...94244
NR annotation: XP_029213362.2, sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P0C6B8Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Svep1 PE=1 SV=1
A2AVA0Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Mus musculus OX=10090 GN=Svep1 PE=1 SV=1
Q4LDE5Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens OX=9606 GN=SVEP1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000589 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00084
all species →		SushiSushi repeat (SCR repeat)DomainInterproscan
PF00754
all species →		F5_F8_type_CF5/8 type C domainDomainInterproscan
PF00431
all species →		CUBCUB domainDomainInterproscan
PF00008
all species →		EGFEGF-like domainDomainInterproscan
PF07645
all species →		EGF_CACalcium-binding EGF domainDomainInterproscan
PF00354
all species →		PentaxinPentaxin familyDomainInterproscan
PF02494
all species →		HYRHYR domainDomainInterproscan
PF14670
all species →		FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan
PF12661
all species →		hEGFHuman growth factor-like EGFDomainInterproscan
PF07699
all species →		Ephrin_rec_likeTyrosine-protein kinase ephrin type A/B receptor-like DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000436
all species →		DomainSushi/SCR/CCP domainInterproscan
IPR003609
all species →		DomainPAN/Apple domainInterproscan
IPR000152
all species →		PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR018097
all species →		Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR035914
all species →		Homologous_superfamilySpermadhesin, CUB domain superfamilyInterproscan
IPR001759
all species →		FamilyPentraxin-relatedInterproscan
IPR000421
all species →		DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR000859
all species →		DomainCUB domainInterproscan
IPR009030
all species →		Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR035976
all species →		Homologous_superfamilySushi/SCR/CCP superfamilyInterproscan
IPR001881
all species →		DomainEGF-like calcium-binding domainInterproscan
IPR003410
all species →		DomainHYR domainInterproscan
IPR013320
all species →		Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR049883
all species →		DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR013032
all species →		Conserved_siteEGF-like, conserved siteInterproscan
IPR050350
all species →		FamilyComplement & Cell Adhesion RegulatorsInterproscan
IPR011641
all species →		DomainTyrosine-protein kinase ephrin type A/B receptor-likeInterproscan
IPR008979
all species →		Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19325
all species →		COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24469SVEP1; sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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