Gene detail

Detailed information of amic_s0169.g22.t2 in Acropora microphthalma

Genomic Location: sc0000169_pilon:298418...301145
NR annotation: XP_044172338.1, double-stranded RNA-specific editase 1-like, partial [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NS39	Double-stranded RNA-specific editase B2 OS=Homo sapiens OX=9606 GN=ADARB2 PE=1 SV=1
B0V3F8	Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog OS=Danio rerio OX=7955 GN=prkra PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012969 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR051247 all species →	Family	RISC Loading Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46205 all species →	LOQUACIOUS, ISOFORM B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003725 all species →	Molecular Function	double-stranded RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0035197 all species →	Molecular Function	siRNA binding	Interproscan
GO:0070578 all species →	Cellular Component	RISC-loading complex	Interproscan
GO:0070920 all species →	Biological Process	regulation of regulatory ncRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0169.g22.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.