Gene detail

Detailed information of amic_s0169.g24.t2 in Acropora microphthalma

Genomic Location: sc0000169_pilon:307384...316565
NR annotation: XP_029187047.2, protein SON-like isoform X1 [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

amic_s0169.g24.t2

ATGAGTTTTGTTTCGGATGAACTTGCTAGTGTTCTGAAATCGGTTTACATGAAGGAGGATATTGCCAAGGAAGACGAGGGTAATTCACATTCAAACGCAGAGAAAAAAGAAAATGGCGAAGTCTGCAAGGAGAAACGCTCGAGAAAGCATAAGCACAAGAAACATTCGTCCAAATCGAAATCTAGGGAGAAAAAGAAGCACAAACGACGAAAGCAcaagtcaagatcaagttcagcatcgcattcgaggtcgagatcacgttcaaACGAAAGAGAAAACTCTTCCAAGCGACCAAGGAGACGGTCTGGATCTCAGTCAAAGTCGGGGTCCAGATCACCAGAAAAAAATGACGATGATGATGATGTCGAACACAAGAAGGAGAATTTCCTCGAGATGACAGAGAAGACGAAATCTGTGGAGGTTGTTGAGATGGGAGCAGATACTAGAGGCATGGTTGATTCTGGTTTTCAAGAAATTGCTGAAGGAGGAGCTACGAAAGTTGAAAAACAGAAGGGTTCTGACGTAACTGGAAGCAGTTTCGATGCTGGTGCAGTCACTGTGAGTGAACAGAAAAATGACATGAAGTGTGGGAAGTTGTTGAAAGGAGACAGTAACACATCAAATGGAAAAACAAACAGATCATTGTCAGAAGAGAAAGTTGATGATGAAAAGAAGAGAAGGGCTTCAGGTTCTAGGAGTAGATCTAGGTCAAAGGAAAAAGATTGTGATTTAAAACAAAAGAAGTGTATGTCTTGTTCTCAAAGTAGAACAACATCATCAGATGAGAGGTTGTCAAGAAACACAAGAAAAAGACAGTCAAGGTCCCTCTCCAGGGGTAGAAAAGCCAAACGAAAGTCCAGCTCAAGCTCAAAGTCCCGATCAAGGTCTCGCTCCAGAAACAAGTCATCTAAGAAAAGATATAAGTCAAGATCATGTTCCAAAACACGAAATCGCAGAAGAACTATTTCAAAATCCAGATCACGTTCTCGTTCTTACAGCAAGTCACGATCCAGGTCACCAAGGTGGAGGCAGTCCTATTCTAGATCAAGAAGAAGGTCTCCCATTTCTCGGAATCATAGATGGTTTTCACCACCTTCTTGGAAAAGAGGAGGAGGTCACTTTAGACATAGGTCCCGTTCAAGGTCTCGAAGGTCACGCTCAAGAAGAAGTATTTCAAGGAGGAGGCAGTCACGTTCAAGATCTGTGTCAAGGAGACGAAGAGGAAGCAGGTCTCAGTCAAGATCTAGGAGAAGATCTGATTCTCGAGGCAGACGAAAAagatctagatccagatccagatccagatccagatccagatccagatccCAGTCGTACTCAAGAGGGAGAACACAAAAGTCATCTTCCAGAGACCCAAAAAGGAGTAAAACTAAAAGTCGGTCTAGGTCCAAGTCAAAATCAAAAGAGAAAACTGGATTACCGGATGAAGTCTCTCCACCCGCAATTCATAATGTAAACACAGCATTGGTAAGCAAAGCTTTAAATATTCCTGACAAACCAGTTGCAGACAGTCTTTCATCGCAGCAGGTTAAAGTGGCCAAGAGAGCTGGAGGAAAGACTATTGCAGAGTTGACTGCTTTTTGTAAGAAATTACAGGAGGAGAAAGAAGCAGATGATAACAGCAATGGCAAGGTCGATGAAACTGAACAAGAAGAAGCTCAGCCAGTTACTACTCATCATCCATTTTTGGTGAAAGAAAAGCCAGATTTCACCATACCACCTGTGATATTTCCAGTGAATATGAATAAGCCAAGTCTTCCTTTGGTAGATTCCAGCAAACCACTTCCACAGCAGTTTCCAGTTTCCTGTGGCAGCAAGCACAGGGAAAAAGAGTCTGGAGATGATCAAGTGTCTGTTGTAGCAGATGTGGATGGATCAGCGATTCAAACACAACGACAGCCGGAGGTGTTTGCTCAAGTGCCGGTGGAGAAGTTTGACATCAGTGATCTTGTGGCTAAACGAATGGAGGCCCAGAGACGGCTTCAAGCGGAACCAAATGACATAGAGGCCCTACTCATGCTCCAGGAGGTGCAAATGAAAATGCAAAACTGGTGTCAGTCTAATGTTAAACCAGGGCAGTTCACCGGTGAGCTTGTCAAGAACCTTCTTCCAAAGGAGCATCTACAAGGAGGTTTTCAAGCCTGGGCAAAGAAGGACATGTTCCACAACCTCACACCAGTTAGTGGAGGGATTGGCATGAAGCTGCTGCAGAAGATGGGCTGGAAACCAGGCCAGGTCATTGGGAAGAGAGGAGAAGGATGCGCAGAACCGATTGCTCTTACTGTCAAGATTGACAGGAAAGGACTCAGTGCAGGAAAGGAAAAAGTCACCAAGAAGGGAACAACTGCAATGATGGACTTACAAGGAAAGCACCCTGTGTCTGCATTGGCAGAATACTGCAGCAAGAGGAAGTGGCCTCTTCCTGACTACTCCTTGGTTTTTGATCAAGGTCCCGCCCACCATAAGCAGTTCCTGTTCAAAGTTTTGGTCAATGGAACGGAGTTCCAACCTGCTGTTGTTTGCGGCAACAAGAAACAGGCCAAAGCTCAGGCAGCCATCTTTGCTCTCAAGGGTCTCGGGCTTATACCTGAAGATGCCGACATTTCCGCACTGTGA

Transcript

amic_s0169.g24.t2

CCACCATTTTTGCTGTAGAAAGTCAACCATGTGAAAATGAGTTTTGTTTCGGATGAACTTGCTAGTGTTCTGAAATCGGTTTACATGAAGGAGGATATTGCCAAGGAAGACGAGGGTAATTCACATTCAAACGCAGAGAAAAAAGAAAATGGCGAAGTCTGCAAGGAGAAACGCTCGAGAAAGCATAAGCACAAGAAACATTCGTCCAAATCGAAATCTAGGGAGAAAAAGAAGCACAAACGACGAAAGCAcaagtcaagatcaagttcagcatcgcattcgaggtcgagatcacgttcaaACGAAAGAGAAAACTCTTCCAAGCGACCAAGGAGACGGTCTGGATCTCAGTCAAAGTCGGGGTCCAGATCACCAGAAAAAAATGACGATGATGATGATGTCGAACACAAGAAGGAGAATTTCCTCGAGATGACAGAGAAGACGAAATCTGTGGAGGTTGTTGAGATGGGAGCAGATACTAGAGGCATGGTTGATTCTGGTTTTCAAGAAATTGCTGAAGGAGGAGCTACGAAAGTTGAAAAACAGAAGGGTTCTGACGTAACTGGAAGCAGTTTCGATGCTGGTGCAGTCACTGTGAGTGAACAGAAAAATGACATGAAGTGTGGGAAGTTGTTGAAAGGAGACAGTAACACATCAAATGGAAAAACAAACAGATCATTGTCAGAAGAGAAAGTTGATGATGAAAAGAAGAGAAGGGCTTCAGGTTCTAGGAGTAGATCTAGGTCAAAGGAAAAAGATTGTGATTTAAAACAAAAGAAGTGTATGTCTTGTTCTCAAAGTAGAACAACATCATCAGATGAGAGGTTGTCAAGAAACACAAGAAAAAGACAGTCAAGGTCCCTCTCCAGGGGTAGAAAAGCCAAACGAAAGTCCAGCTCAAGCTCAAAGTCCCGATCAAGGTCTCGCTCCAGAAACAAGTCATCTAAGAAAAGATATAAGTCAAGATCATGTTCCAAAACACGAAATCGCAGAAGAACTATTTCAAAATCCAGATCACGTTCTCGTTCTTACAGCAAGTCACGATCCAGGTCACCAAGGTGGAGGCAGTCCTATTCTAGATCAAGAAGAAGGTCTCCCATTTCTCGGAATCATAGATGGTTTTCACCACCTTCTTGGAAAAGAGGAGGAGGTCACTTTAGACATAGGTCCCGTTCAAGGTCTCGAAGGTCACGCTCAAGAAGAAGTATTTCAAGGAGGAGGCAGTCACGTTCAAGATCTGTGTCAAGGAGACGAAGAGGAAGCAGGTCTCAGTCAAGATCTAGGAGAAGATCTGATTCTCGAGGCAGACGAAAAagatctagatccagatccagatccagatccagatccagatccagatccCAGTCGTACTCAAGAGGGAGAACACAAAAGTCATCTTCCAGAGACCCAAAAAGGAGTAAAACTAAAAGTCGGTCTAGGTCCAAGTCAAAATCAAAAGAGAAAACTGGATTACCGGATGAAGTCTCTCCACCCGCAATTCATAATGTAAACACAGCATTGGTAAGCAAAGCTTTAAATATTCCTGACAAACCAGTTGCAGACAGTCTTTCATCGCAGCAGGTTAAAGTGGCCAAGAGAGCTGGAGGAAAGACTATTGCAGAGTTGACTGCTTTTTGTAAGAAATTACAGGAGGAGAAAGAAGCAGATGATAACAGCAATGGCAAGGTCGATGAAACTGAACAAGAAGAAGCTCAGCCAGTTACTACTCATCATCCATTTTTGGTGAAAGAAAAGCCAGATTTCACCATACCACCTGTGATATTTCCAGTGAATATGAATAAGCCAAGTCTTCCTTTGGTAGATTCCAGCAAACCACTTCCACAGCAGTTTCCAGTTTCCTGTGGCAGCAAGCACAGGGAAAAAGAGTCTGGAGATGATCAAGTGTCTGTTGTAGCAGATGTGGATGGATCAGCGATTCAAACACAACGACAGCCGGAGGTGTTTGCTCAAGTGCCGGTGGAGAAGTTTGACATCAGTGATCTTGTGGCTAAACGAATGGAGGCCCAGAGACGGCTTCAAGCGGAACCAAATGACATAGAGGCCCTACTCATGCTCCAGGAGGTGCAAATGAAAATGCAAAACTGGTGTCAGTCTAATGTTAAACCAGGGCAGTTCACCGGTGAGCTTGTCAAGAACCTTCTTCCAAAGGAGCATCTACAAGGAGGTTTTCAAGCCTGGGCAAAGAAGGACATGTTCCACAACCTCACACCAGTTAGTGGAGGGATTGGCATGAAGCTGCTGCAGAAGATGGGCTGGAAACCAGGCCAGGTCATTGGGAAGAGAGGAGAAGGATGCGCAGAACCGATTGCTCTTACTGTCAAGATTGACAGGAAAGGACTCAGTGCAGGAAAGGAAAAAGTCACCAAGAAGGGAACAACTGCAATGATGGACTTACAAGGAAAGCACCCTGTGTCTGCATTGGCAGAATACTGCAGCAAGAGGAAGTGGCCTCTTCCTGACTACTCCTTGGTTTTTGATCAAGGTCCCGCCCACCATAAGCAGTTCCTGTTCAAAGTTTTGGTCAATGGAACGGAGTTCCAACCTGCTGTTGTTTGCGGCAACAAGAAACAGGCCAAAGCTCAGGCAGCCATCTTTGCTCTCAAGGGTCTCGGGCTTATACCTGAAGATGCCGACATTTCCGCACTGTGAAACATGAATCTGCAAGTGTCGAATTCAGTGCACCCGGTTTTCAAACTTTCCCGCATTTTTCATGTGGAGTTTAGCTGAGTTCTAAACACTATGGGGACTGGTTACCAGTCTTGGTCCTGGTGCCCAACCTCCAGCTACTAAGACGCTGCACGATTTAAATTATGGTTTAATATCATTATCATGTTGTCAGATGTTATTACCAATTCGTGGACTTGTAACTACAAAAACCCTTATCCTATCTTTCCTACCTCTCTTTGGTGAACTAATTTCAAACGTCTTTTTCTGTTAATTTTGAAGCGACAGCACTAGAAGTTGCTGGATGTATACTTCCGTTCAGGCAACTGTTTAAATTCTTCCTGCCTGGTCAATTATCGTTTATTATGACCATGACGATTCCtttgttctctgtttttgtttttgtcattgttttgtgcttgAAAAAGTGCAAAAAGTTGGACAATGGACAAAACAGGTTAAGGATGGGAGGAAGTTGTGAAAAGGCGCCAAGACATTTCGTTCAAACTCGTCCCTGGATTCATTCGTTTTCATCGTATTCTTGTTTCGCCTTTGGGTCCGACGAGGGCGTCTTCTAAATGTCCCAATCACTCTTTTTTCGCGACCTTTTCGAATAAATTATACGCTATTTTGAAACCAGAGGAAAATTCGTTTGTTCCCCAGAGAAGTCATTCGTGAAATAAAGGGACGTAACATATTTTAAAATCGGTTGTTTTTTTTCCTTCTCCAAAGTCAAAAATGCTTTTGAATAGAAATCCGCCTGGGGTTGGGGCAAGTTACGAAATAAATGTTGTGCACTTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QX47	Protein SON OS=Mus musculus OX=10090 GN=Son PE=1 SV=2
Q9VHB0	Protein Son OS=Drosophila melanogaster OX=7227 GN=Son PE=1 SV=1
Q6DGZ0	G patch domain-containing protein 11 OS=Danio rerio OX=7955 GN=gpatch11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003683 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan
PF00035 all species →	dsrm	Double-stranded RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014720 all species →	Domain	Double-stranded RNA-binding domain	Interproscan
IPR032922 all species →	Family	Protein SON	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46528 all species →	PROTEIN SON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23718	SON; protein SON	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.