Gene detail

Detailed information of amic_s0169.g37.t1 in Acropora microphthalma

Genomic Location: sc0000169_pilon:411466...425075
NR annotation: XP_044172976.1, zinc finger MYND domain-containing protein 11-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0169.g37.t1

gtttaaaactttgagGAAGTGTTACCCTTGGCTCCTGTTGTCCTTCGTTTCGTTGCCAACCAATTCGAAGCACAAATAGCGCAGGGAAATTGAACTCTAAAGTAGAAAAAGCTACTATTAATTTGAGCAATATCCGTATCCCTTTATCAACCTACATAACATCAAATACTCTGATCAAATTAAACGGAATTGATGCTTCAAAGTGTTGCGTGATTCTCATTTTGTGTCAATTTCCGTTGTTTTTCCGCTACGTCATCGGGAGGTCATCGTGGATTCGTCCGCGATGTTGAATCATGCGTATTGGCAAAGGTGACCCGCGAAAGAGTCGTAATATACTTGGTGGATGACCGAAGAGGGGTTTGAGTCGTGTGTCTGGAATGGCAAAGTTCTCTGTTAGGAGATACTCCGATCCTTACTATGTCATTGCGCTTAAAGAAGCCATTGTGAAAATCTCGGCCCAAAAACAGTGTCCAAACGAAGAAAGAATTGTGCGTTCGGTGCTTCAAGAATTCGACTGGAGTAAAAGCGAGATTATCAAACAGCTAAAATTTGCGGTTAAAGACGGCTTAATTCTTCAGGTAACTACGTTTTCCAGTCATGGGAGCACAAAAGGAATACCACAGACAGCTTACAGAATCCAACGTAAAGATGGAGAAGACGACGATGAAGTGCAGAAGCAAAGGAAAAAGCTAGCATCAAACACGCATGACTGGTATTGTTGGGAATGTCACAAAGCTGGGGAAGTGATAGCTTGCGACCACTGCCCTCGTGTATTTCATAAGAAATGTGCCCATTCTGGTACCGTAGCGAATGGAAAATGGAAATGTCCATCTTGTCAGCCTCAGAAGCTGTCATCTCTCATGTCAAGCAAGACAACTGAGCAGCTTACGCGGTTGTTGAAATACACTTTAGAGCGGATGAAAGAAAAGGCAAAGGAATTCAAAGAACCAATTTCACAACAAGAACACCCTGATTATGAGGACTTCATATTTAAACCAATGGATCTAAGTAAACTAGAAAAGTCTGTAGAAAAGAGAGCTTTCAAGACTCCCCGAGAATTCAGAGAAGAATCACAATGGATGTTCCATAATGCAATTATTTATTTTGGAGATGATGATGAATTGACAGAACTTGCAGAGACGATAATGGAAGATTGTGATGGAGAGCTGGAAGAAATGATGCGATGTCCAGATTGTTATTTGATGTCCAACTTAAGAACCAAGAACTGGTTTTGCAAACCATGTTACTTCCCTCATGAACTTGTTTGGGCGAAGATGACTGGGGAACCGCCATGGCCTGCAAAGATGCTAAGCTGGAGTGAGGATAACACAAAAGCTTTGGTGCGATTTTTCGGATCGGCTCATCAGAGGGCCTGGGTGGGCCGAAAGCACATCACGCCAATAACGAGCAAACCAGAAGTAAAGAAACGTTCACAGAGATGGGTGCAGGCTTGTAACGAGATGGCAGAATATCAGAGGCAACTTGCTTTGTTGTACCCAGACAATAAACGGCGAGAGAAATCTGTATCGTCCTCGGCCAAAACTGTGTGCAAGGAAATTCAAACTGACTTTCCCTGCAATCAAGACGATAGAGTTAAACAGTTAGAGGAAACAATTGAGGAGCAGCAAGAGGAGATAAATTCGCTAAAAGCGGACCTGAATTGCGAAAGAGAACGCGCCAAGCAACTTGTGGAAGATGTGAAACGAAGAAAAGATGAACAAAATCAGCGAGTGTTGCGTGACAGATCTGTTAGTAAGCAGTGCTGTCACGAAATGTCCGAGAACTGTAGTTGCAGCAGTGGTCCAACGATTGACCTTTCGACGACCAGGGATCAGCCGAATGTTATTAAAATGTTACAAGATGCGCTTGAACGCGAGCGACTCGAGAAAAATGAACTCATCGAAAAAGTCATGCGGGACGCACAAAAGAACAAAGAACGGGAAATTCAACAGGTTGTGAAAAGAGCTGTCAACAAGGAGAGGCTTGAACGAGAACGTATCACGGACGAAGCGGTGAAGAAAGCCATTGACAGATGCAAACAAGAACGAGAGAAACACATCAAAAAAGTTCTCCATGTGGCAAAGGAACAGGAGGAGAAATCCGTTCAAGATGCAGTGAACGCGGCGAAGAAGAAGCAGTGGTGCTCGAATTGTCGAGCTGAAGCTTTTTATCCATGTTGCTGGAACACCAGCTATTGTACTTTAGATTGTCAGAAAACCCATTGGGATACTCACAGATTCCATTGCATGAGGATTCCTTGCAACTGTAGTAGGGATAGCCCCATGACGCGTACGTGACGTCATTGTTACCAAGGTAATACGAAAGGAAGGTCGTTATGACAAGTTGATTTTCACTGTAGGTTTATCAAGACCGAGAAGGGAAGGTATGAGAAGTAGAATTAAAAAAGGGAATCACGGAAACAGAAAGCACTTTGTTTTCATTTTTGTTTTTTGGATTTTAAAGTTTGTTGACTGATAACAAGTTCTTTGCTTCTTGTCAAGATTTTTTTTTTACATATTTTGTTTATAGTCTCATATTTCTTATGAAAGTTTCAAGCCTGCTAGCCCTGCTTGCTACATTGCAAGACAAGTTGTACGTTTGCGTGGCCCATGTGCAGTTTTTTTGCGTACGTAGCAAACGTTGCCCATGCAGCTGTACAAAGAACAACAGTGCCATTTCTGCAATGATAGAAACGTATTCTGTCCCGTTATGGATTGTGACATTCACGTCATCAAGTTGTCTCGCACTATTTCCCGTGGCAGTGACTTGTGCAGGTGCCATCTGTTTCATGTAAGACGTAATGTTTTGTACACCTCGTGGCAATGTGGCATTAATAGTGGTTGTGTAACAGCACCTAAAGGCCAAGCCGAACTCAGGAAATGGAGCCAATCGTTATATCTGGATTTTCCAATGGTTGAAAATCTATCGTAATTTCCCTCAATTTTCTTGACTCGGAACGCACCACAAGAAATAACCTCGTAAGAGAGCTGCGCATGGGCAAAAAGAAGCGATGAACTTCTGGTGATTTGAGAAGTTCATACATTTACCTGGAAAGCTTATATTATTGATACCACAAGTTCACTGTTCCTAGCCGAAATATATTTTTATAATCATACCTACGAGTACATTGTTTGTAAATATGTCAAACCAGACGTAGTCTGTAGGCTATAGAAGAATTCATTTTGTTGATGACAACGATTGCAATTTAGTCGTGAAATATTTCCACTGGGTTTCAGGCACGTTTTAAATGCAAGGACGGTGCATTTTTGTATCTACCTTAAGAGGTAACAAGGGTCCAGGCTTCCTTGTTTCCTTGTAAATTGACAGCTGGTTAACGCGTGTGAGGAAGTCGTTAGTGTCCTTGTGCCTCTGACTGGCTGAGAATTTGGCGAATGATCTATTTCGTGCAATCACAATCACAAAACAGAAGCAATTGTAACATTTTAGGAAACTGAAAACTATTATATTCGTTTCTATTCTTGTTTAAAGGTGGTAGACGAATTCTTCATATGAGTGATTTATTTGAATTTCTGTGGACCCATGAAGTAATATTTTTTTCCTAAATTGGGTTTATTATGAAGAACGGTTAGTTTCGGGTGGGTCCACACTTCGTCAAAATTTTATAGAACACAGAAGTCTTCTTCAGTCAAGGACGCTTTTGAAACTGGGACCTTGAGCTCGGCACGAAAACTGGAGATTGAATTTCCAGGATATCCTAAGGAataggcgaatctttgtttacaccttttgcctccttaacatatgcttatcactatctgatgacgctaataaaatgaatattgaaagggcataacagttgaagttttctctgaaaatttgagtccaattcatcgaatggtttcggagaaattctcttctaaaaactcgaaattttacaggggatctcatatatacggccactgcttctatttggtaagacgtatgctaatgagcaaaaatgtaaacaatgacgtcagcaaagattggcctataGTCACTAGTAAATTAAAACTGAAGAGTTAACTGTGATGGAGGACATATTGCTCTTAAATAATTAGCCTATCGAAGGATCACAAAGAAAACGGAAAGTTGCTGCCCTGGGCTAACTGTAGAAAGCGGAAGAAATATTGCGTTTTTAGGTATATTTTTCATAGTACTGCAAATGGGTCCTCGCACTGCACCCTTTGCTATTAATCAACTAGCAGATGCGTCCTGTATAAATTTTTGTACCATTTCAGTGAGATAAAGTTCATGGAGACTTGAAACTTTAGTGTATTTATAGGCAGTATTTATTGACAGCCTTACAGTAATTTTGCCGCTTTCCTCTGTAAGTTTGTGTCCAGTAGTTCTTAGTTTTATATTGGTACTTAAATAGTTCATTAATAGAGACCATTTTTAGAATACCATGCTGAGAGTTTTAAAAGTTACCTTGCTAAAAATTATAACTCCGTCCACAAAAACAGAAATAACAGCTGTTCAGTCTCGTACAAAGGAAGCTGATTTGTTGATGTTGTGAGTTTCCTTGACGTAAACAAATTAATATATTCATAAGTTTGAGGTATCTTTGTCACCACTTCCAAGTTGTTAATGTGCCAATCTGAGCTTCAGTGGCTTCTAAAAAAAGTTATCTTTTGTTACAGTTGATGGCACTTGTGAAAGAAAATGGTTTCCTGAATTTAAGATTCACAGTAATGAAAAATTTGAGTCTTAGAGATAAGTTGGTAATCATCGTTTCCTGGTGTATTTTTACCCTATTCACCCCTCACCGCCCGCTTTCCAACGGCCTCCTCGACCCTACATCTATGTCTCTCATGAACAATAGAGTGGGTACCCTGAATCCTACTTTCGTATGTACAATTATAATCACTATCAAATTATAAATAAATATGTCAGCAAAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ULU4	MYND-type zinc finger-containing chromatin reader ZMYND8 OS=Homo sapiens OX=9606 GN=ZMYND8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006550 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313 all species →	Domain	PWWP domain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR047269 all species →	Family	Zinc finger MYND domain-containing protein 11	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR047268 all species →	Domain	Zinc finger MYND domain-containing protein 11, PWWP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46379 all species →	ZINC FINGER MYND DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0009966 all species →	Biological Process	regulation of signal transduction	Interproscan
GO:0034243 all species →	Biological Process	regulation of transcription elongation by RNA polymerase II	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for amic_s0169.g37.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.