Gene detail

Detailed information of amic_s0169.g52.t1 in Acropora microphthalma

Genomic Location: sc0000169_pilon:619189...634722
NR annotation: XP_044177813.1, tyrosine--tRNA ligase, cytoplasmic-like [Acropora millepora]
Species Acropora microphthalma · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

amic_s0169.g52.t1

TCCGTGTTTTGGAGTCTACACGTGGGAATCAGGCTAGCAAGGAAAAGACACGCTTCTTTTGTAGGATTTCTATGCTTCAGAGGTTTAATACATCAAGGTGTCTTGTTAAGAAATTAAGCTTGAATCAACTGCCACGAATCAATTTTTCATCGTTCGTGAGGACACACTTTCACTTTCTGTCTTTGGGAAGAATGGCTTCCACGGGAAATTGTTCTGTTGATGAACAATTAAAATTGATAACGCGAAATTTGCAGGAAGTTATTGGCAAAGACCGTCTACGAGCTATCCTTTCAGAGAAACATCTATGTTTGTACTGGGGCACGGCCACAACAGGAAAACCACATGTGGCATACTTTGTGCCGATGATCAAAATTGCAGATTTTCTAAAAGCTGGTTGTGAGGTCAAAGTCCTGTTGGCTGATCTTCATGCTTACCTGGATAACCTGAAAGCACCCTGGGAATTGCTGGAACACAGAGTCAAATACTATGAAGAGATAATTAAGGCAATGCTGGAATCCATAAATGTTCCTTTGGACAAACTGAAGTTTGTTAGGGGCACAGAATTTCAACTAAGCAGAGATTATGTTTTGGATGTATTCAAAATGTCAACTGTTGTGACAGAGCATGATGCCAAAAAGGCTGGGTCTGAGGTGGTAAAACAAGTGCAGCATCCTCTTCTCAGTGGTTTATTGTACCCTGGTCTTCAGGCTCTTGATGAGGAGTATCTTAAAGTAGATGCTCAGTTTGGTGGTGTTGATCAAAGGAAAATTTTCACATTAGCTGAGAAGTACCTGCCTGTCATGGGTTACAAGAAGAGAATACATCTGATGAATCCTATGGTTCCAGGTCTAACAGGAAGCAAGATGAGCTCTTCAGATGAGGATTCAAAAATTGATCTTTTGGATGGTGCTTCAGCTGTAAAGAAAAAGTTGAGCAAGGCATTCTGTGAAGAAGGAAACATTGAAGACAATGGCATTTTGGCTTTTGCCAAGTTTGTTATTTTTTCTGTTTTGGAATTAAGACATCAAACAGGATTTGTCATTGAAAGAACTGAAGAAAATGGAGGAAACCTGACATTCAAGGACTATGCATCTTTGGAGCTAGCATTTGCTCAGAAGGAATTACACCCCTTGGACCTGAAGAATGCTGCTTCAAGCTTCATAAACGATCTCTTAGATCCAATCAGAAAGAAATTTGAAACCCCAGAACTGAGAAAGATTACGAATCTTGCTTATCCTGAAACAAAGAAACCAAAGGGAGGAAATAATGGCCCTGCAGCAAAAGAGGTCAATCCATCAAGACTGGATTTGAAAGTTGGAAAAATTCTTTCAGCAAAGAAGCATCCTGACGCTGACTCACTGTACTTGGAAGAGATTGATGTCGGGGAGGAGAAACCTAGAACAGTGGTAAGCGGTTTGGCAGACTATGTGCCTTTGGAGGAGCTTGAAGGACGACTGGTTGTAGTGATGTGCAACCTGAAACCTGTTAAAATGAGAGGTATCTTATCACAAGCAATGCTCTTGGCAGCCTCAATAACTGGTTCTGAGGGAAAACGTCAAGTCACCCCTTTGTGTCCACCAGCTGATTGCAAACCTGGTGATCGAGTTGTCATAAAAGGCTATGAACATGAAATAGCGGGAGCTCCAGATGAGCAACTGAATCCAAAGAAGAAGATATTTGAAACGCTCCAGACCGACCTGCTGACAAATGAAGATGGCGTAGCAGAATATAAAGGCTGCCCTATGGTGACGTCCGCCGGACAGATCACTGCCCCTTTGAAGAACGCTCAAATCAGTTAATTTAATCGAATCGCCAGCAGTTATGAATTCAATTCAAACAATTTCAGCGCGAGAATAACTTAACGAACCtaataataatagtaataatgatgaaattaaATTGAAAGATAAGACTATCAATTGGTTAGTGTATAAATGAGGGGTAACATGCGAAACCGCTTTCAGAGCCGATACATTACTGAGGTCAAGTTGCTTCTCGTTGTAGTAAGCAAGGTAAGAGACTAGTTGGCGCCGACTTTATATGCTGCGAATTTTACGCTCGCAATTCGTGGGCACAAGGTAAGTTACCCTTCGCGCGCGAAGTCGCGTGTTGCCACGGTGACTTGAGTCTGTCAAGTCACGGTTGAGTGGCCGTAACAGCGGATAGTTTATCATTGGAACCATGATATCTAAGACTAATTTAGCTGAAACCTTTTGACGTGTTTAAGGAAGGCTTCGTATTAGCCTATCCTCCGCAAAATTGAGTGGGGCGCCTAGAATGGGAATGGAACGTTTATAATTTACATGCATTGATTGCGTCTGCCACTTTACTCATTTAGAATTCAGGAGTTGAACAGTGTCAACCTACGCCTTCATCACCAGCGTGATTTCACCCACAGATGTTTCAAACGCGCTTAACATGGTTTAGGTTTTGGATGAAATGTGGCGGGATTATGCACATTTAATCTCAACTGAACTACAGAGCGAAATTGTTTCCAGACTAAGTGAGGGGTTTTCAAGAACGGATTTGAAACGTGTAATAGCCCGGTAACTAGCGAATTCGTCTATTCCGTTCTTGGCCACCTTAGGGATTGAGAGGTAAAAAAAGAGACAATCGACAATTTTTCTCCCCTTCCGGTGCAACATTGGTCGTGTTATTTATTCGAAGGGTTAAACAGTGTTTTCAACAAAGGTTCCTTTAATCATTATTTTCGCATCATTGATTTTGCTTGTCACGCAAGAGAAGTGTTTTTTTTTACTCGTGATTTTTCGCAGGATTAATATCACGGAAACCAACAAACTTTATTAAAAGGGCTACATCACTCTATAGAGGCAGAGGATATGATTGCGCAAATAATTGAGACATTACAAATTTTGGTTTGGCTACACACAGATTCCTCGCACTTTGAAACTGTTTTCGCTTTTGCGAATATTAAAAAAAAAAAAACAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R8T5	Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=YARS1 PE=2 SV=3
Q5ZJ08	Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=YARS1 PE=2 SV=1
Q4KM49	Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Yars1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01588 all species →	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051270 all species →	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR002547 all species →	Domain	tRNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586 all species →	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004831 all species →	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15437	AIMP1, ARC1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.